Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KI231_RS25170 Genome accession   NZ_AP021903
Coordinates   5604209..5605798 (+) Length   529 a.a.
NCBI ID   WP_213026623.1    Uniprot ID   -
Organism   Pseudomonas sp. Seg1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5599209..5610798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI231_RS25150 (PHLH6_49630) pgeF 5601010..5601732 (-) 723 WP_213026622.1 peptidoglycan editing factor PgeF -
  KI231_RS25155 (PHLH6_49640) rluD 5601729..5602691 (-) 963 WP_103303582.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI231_RS25160 (PHLH6_49650) - 5602843..5603859 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  KI231_RS25165 - 5603986..5604219 (+) 234 WP_103303583.1 PP0621 family protein -
  KI231_RS25170 (PHLH6_49660) pilS 5604209..5605798 (+) 1590 WP_213026623.1 ATP-binding protein Regulator
  KI231_RS25175 (PHLH6_49670) pilR 5605795..5607138 (+) 1344 WP_213026624.1 sigma-54 dependent transcriptional regulator Regulator
  KI231_RS25180 (PHLH6_49680) thiO 5607266..5608366 (-) 1101 WP_213026625.1 glycine oxidase ThiO -
  KI231_RS25185 (PHLH6_49690) - 5608424..5608825 (-) 402 WP_103303587.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58445.22 Da        Isoelectric Point: 6.8237

>NTDB_id=75691 KI231_RS25170 WP_213026623.1 5604209..5605798(+) (pilS) [Pseudomonas sp. Seg1]
MIAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIGALGIVALSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQKASEVVGLEALNALILQRMRTGILVLDAQRRVQLANQSAQTLLAQSHLQGHLID
DYSTALVDRLQLWMNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDGADRRLTQIIQDHSKRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQATER
QQIHLRIHSGDFTTLMDPNQLTQILDNLLRNGWRHSGLLHEQAEVWLALFIDPDSQLAVLEVQDNGPGVALDEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=75691 KI231_RS25170 WP_213026623.1 5604209..5605798(+) (pilS) [Pseudomonas sp. Seg1]
GTGATCGCTGAGGCCGCCAACGCCGATCAGAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTTTACCGCTTGAGTGT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAATATGGACAATCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGTTGGCTGTATCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACCCGGCGCCCGGCCCAGCTATTC
AGTCTGGCGCTGGTGGATGTGCTGCTGTTGTGTGGCCTGTTCTATGCGGCGGGTGGCGTGGCGAGTGCCCTCGGCAATTT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATCGCGGCCATTGGCGCCCTCG
GCATTGTCGCCTTGAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAATGAATATTTGCAGGCCGGCACCCTTGGC
GCATTGTGTTTTGCCGCGTCGTTGCTGGTGCAGGGGCTGATCCGGCGACTGGAAGTCAGCGAAACCCTGGCCGAGCAGAA
AGCCAGTGAAGTGGTCGGACTGGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGGATTCTGGTACTCGACG
CGCAACGTCGGGTGCAACTGGCCAACCAGAGCGCGCAGACCTTGCTCGCGCAGTCGCATCTTCAAGGCCATTTGATCGAC
GATTACTCCACCGCGCTGGTTGATCGCCTGCAACTGTGGATGAACAACCCGACCCTGCGTCCGCAAAGCCTGAAAATCCC
CGGTAACGGCCTGGAACTGCAGCCGAGCTTTATCGCCCTCGAACAGAGCCCCAACCAGCAAACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCGCCCAACAGGCTCAGCAACTGAAACTCGCTGCGCTGGGGCGTTTGACCGCCGGTATTTCTCACGAA
ATTCGCAATCCACTGGGCGCCATCAGTCACGCCGCGCAGTTGCTGGGCGAATCCGAGGAACTCGATGGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCAAACGCATGAATCGAGTCATCGAAAACGTCCTGCAACTGTCTCGTCGCCAGC
AGAGCGCCCCGCAACGCCTGGATCTCAAACCATGGCTGGAAAACTTCGTCGCCGAAAGCCGCGAACAGGCCACCGAGCGC
CAGCAGATTCATTTGCGGATCCACTCGGGCGACTTCACCACCCTGATGGACCCGAATCAGCTCACACAAATTCTCGACAA
TCTGTTACGTAATGGCTGGCGTCACAGCGGACTTCTGCACGAGCAAGCCGAAGTCTGGCTGGCCCTGTTCATTGACCCCG
ACAGCCAGTTGGCGGTGCTCGAAGTGCAGGACAACGGCCCTGGCGTGGCGCTTGATGAACAGGCCCATCTATTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601

Multiple sequence alignment