Detailed information NTG0075690

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI231_RS25070
• Genome accession: NZ_AP021903
• Coordinates: 5590797..5591669 (+)
• Length: 290 a.a.
• NCBI ID: WP_213026617.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Seg1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5585797..5596669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI231_RS25045 (PHLH6_49460)	-	5585987..5586283 (+)	297	WP_213028839.1	DUF2845 domain-containing protein	-
KI231_RS25050 (PHLH6_49470)	-	5586550..5586906 (-)	357	WP_213026614.1	BON domain-containing protein	-
KI231_RS25055 (PHLH6_49480)	-	5587205..5587648 (-)	444	WP_103306537.1	pilin	-
KI231_RS25060 (PHLH6_49490)	pilB	5587875..5589575 (+)	1701	WP_213026615.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI231_RS25065 (PHLH6_49500)	pilC	5589578..5590795 (+)	1218	WP_213026616.1	type II secretion system F family protein	Machinery gene
KI231_RS25070 (PHLH6_49510)	pilD	5590797..5591669 (+)	873	WP_213026617.1	A24 family peptidase	Machinery gene
KI231_RS25075 (PHLH6_49520)	coaE	5591666..5592289 (+)	624	WP_213026618.1	dephospho-CoA kinase	-
KI231_RS25080 (PHLH6_49530)	yacG	5592286..5592486 (+)	201	WP_213026619.1	DNA gyrase inhibitor YacG	-
KI231_RS25085 (PHLH6_49540)	-	5592493..5592708 (-)	216	WP_007959584.1	hypothetical protein	-
KI231_RS25090 (PHLH6_49550)	-	5592774..5593463 (-)	690	WP_213026620.1	energy-coupling factor ABC transporter permease	-
KI231_RS25095 (PHLH6_49560)	-	5593460..5593927 (-)	468	WP_103306530.1	FAD/FMN-containing dehydrogenase	-
KI231_RS25100 (PHLH6_49570)	-	5594058..5594684 (+)	627	WP_103306529.1	DUF1780 domain-containing protein	-
KI231_RS25105 (PHLH6_49580)	-	5594681..5595208 (+)	528	WP_103306528.1	MOSC domain-containing protein	-
KI231_RS25110 (PHLH6_49590)	-	5595260..5595433 (+)	174	WP_003228304.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32367.67 Da
• Isoelectric Point: 7.0624

>NTDB_id=75690 KI231_RS25070 WP_213026617.1 5590797..5591669(+) (pilD) [Pseudomonas sp. Seg1]
MPIDELFALYPLAFVCTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLWLRGRCSACATPISKRYPLTELACGLLSAFIAWHVGFGWPACLLIFLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGMFVSLHEALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRVREQKTSVPIPFGPFLAIAGWIALLWGGQITDFYWQFVGLQ

Nucleotide

• Length: 873 bp

>NTDB_id=75690 KI231_RS25070 WP_213026617.1 5590797..5591669(+) (pilD) [Pseudomonas sp. Seg1]
ATGCCTATCGACGAACTGTTTGCCCTCTATCCGTTGGCTTTTGTCTGCACGGCGTTACTGCTCGGCCTGGTGGTCGGCAG
TTTTCTCAATGTACTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCCCAGGACGTGCTCGGTC
TGCCCAGCGAAACACCGTTGCCCACCTACAATCTGATGCTGCCCCACTCCGAGTGCCCGCATTGCGCACATCGAATCCGT
GCCTGGGAGAACATTCCGCTGCTCAGTTATCTGTGGCTGCGTGGACGCTGCTCGGCCTGCGCCACGCCCATCAGCAAACG
CTATCCACTGACCGAACTGGCCTGTGGACTGCTCTCGGCATTCATCGCCTGGCATGTCGGATTTGGCTGGCCGGCCTGTC
TGTTGATTTTTCTCACCTGGGGCTTGTTGGCGATGAGCCTGATCGACACCGAGCATCAACTGCTGCCCGATGTGCTGGTG
CTGCCCTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGCATGTTCGTGTCGTTACACGAGGCATTGTGGGGTGCGGT
GGCCGGGTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGTCACGGTGATT
TCAAGCTGCTGGCGCTGCTCGGCGCCTGGGGAGGCTGGCAGATTCTGCCACTGACGATCCTGCTCTCATCGTTGGTGGGG
GCGATCATCGGGGTGATTCTGCTGCGTGTGCGTGAGCAGAAAACCTCGGTGCCAATCCCCTTTGGCCCATTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.61	97.241	0.531
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	48.432	98.966	0.479
pilD	Acinetobacter nosocomialis M2	48.432	98.966	0.479
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459