Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OQ460_RS22620 Genome accession   NZ_CP110853
Coordinates   4954422..4954937 (-) Length   171 a.a.
NCBI ID   WP_410019387.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4949422..4959937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS22595 (OQ460_22530) - 4949501..4950610 (-) 1110 WP_410019382.1 DUF3182 family protein -
  OQ460_RS22600 (OQ460_22535) - 4950792..4951784 (-) 993 WP_410019383.1 GlxA family transcriptional regulator -
  OQ460_RS22605 (OQ460_22540) - 4951881..4952441 (+) 561 WP_410019384.1 cysteine hydrolase family protein -
  OQ460_RS22610 (OQ460_22545) tam 4952455..4953216 (-) 762 WP_410019385.1 trans-aconitate 2-methyltransferase -
  OQ460_RS22615 (OQ460_22550) - 4953531..4954355 (+) 825 WP_410019386.1 alpha/beta fold hydrolase -
  OQ460_RS22620 (OQ460_22555) ssb 4954422..4954937 (-) 516 WP_410019387.1 single-stranded DNA-binding protein Machinery gene
  OQ460_RS22625 (OQ460_22560) - 4954947..4956341 (-) 1395 WP_410019388.1 MFS transporter -
  OQ460_RS22630 (OQ460_22565) uvrA 4956520..4959354 (+) 2835 WP_410019389.1 excinuclease ABC subunit UvrA -
  OQ460_RS22635 (OQ460_22570) bfr 4959423..4959887 (-) 465 WP_339530084.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18973.15 Da        Isoelectric Point: 5.9455

>NTDB_id=756662 OQ460_RS22620 WP_410019387.1 4954422..4954937(-) (ssb) [Pseudomonas sp. 16FHM2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNAAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=756662 OQ460_RS22620 WP_410019387.1 4954422..4954937(-) (ssb) [Pseudomonas sp. 16FHM2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGGGTGTCGATGTTCGGCAAGGTGGCAGAAATCGCCGGTGAGTACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAACGCTACACCACGGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAAGGCGACCAACAAGGCCAGGGCGGCATGTCCAACGCGGCACCACGTCCACAGC
AGTCCCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCGCCGCAGCCGGCCGCA
GACTTCGATAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.876

100

0.509
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

47.159

100

0.485