Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OHI04_RS11710 Genome accession   NZ_CP110849
Coordinates   2333105..2333605 (-) Length   166 a.a.
NCBI ID   WP_039116505.1    Uniprot ID   -
Organism   Lactococcus lactis strain VHProbi V60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2328105..2338605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS11685 (OHI04_11690) gnd 2329168..2330073 (-) 906 WP_038603774.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OHI04_RS11690 (OHI04_11695) - 2330437..2331285 (+) 849 WP_003131770.1 MurR/RpiR family transcriptional regulator -
  OHI04_RS11695 (OHI04_11700) - 2331323..2331631 (+) 309 WP_017865196.1 DUF960 domain-containing protein -
  OHI04_RS11700 (OHI04_11705) - 2331713..2332486 (-) 774 WP_003131951.1 metallophosphoesterase -
  OHI04_RS11705 (OHI04_11710) rpsR 2332686..2332931 (-) 246 WP_023190141.1 30S ribosomal protein S18 -
  OHI04_RS11710 (OHI04_11715) ssb 2333105..2333605 (-) 501 WP_039116505.1 single-stranded DNA-binding protein Machinery gene
  OHI04_RS11715 (OHI04_11720) rpsF 2333635..2333928 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  OHI04_RS11720 (OHI04_11725) - 2334120..2334974 (-) 855 WP_012898664.1 undecaprenyl-diphosphate phosphatase -
  OHI04_RS11725 (OHI04_11730) - 2335497..2336963 (+) 1467 WP_039116508.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18332.18 Da        Isoelectric Point: 6.3686

>NTDB_id=756642 OHI04_RS11710 WP_039116505.1 2333105..2333605(-) (ssb) [Lactococcus lactis strain VHProbi V60]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSRSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=756642 OHI04_RS11710 WP_039116505.1 2333105..2333605(-) (ssb) [Lactococcus lactis strain VHProbi V60]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCGATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367