Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OPU65_RS17650 Genome accession   NZ_CP110812
Coordinates   3438805..3439539 (+) Length   244 a.a.
NCBI ID   WP_265625509.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3433805..3444539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS17625 (OPU65_17625) degS 3434101..3435258 (+) 1158 WP_265625508.1 histidine kinase Regulator
  OPU65_RS17630 (OPU65_17630) degU 3435340..3436029 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OPU65_RS17635 (OPU65_17635) - 3436149..3436991 (+) 843 WP_243941930.1 DegV family protein -
  OPU65_RS17640 (OPU65_17640) comFA 3437115..3438509 (+) 1395 WP_301441459.1 DEAD/DEAH box helicase Machinery gene
  OPU65_RS17645 (OPU65_17645) - 3438564..3438848 (+) 285 WP_243941932.1 late competence development ComFB family protein -
  OPU65_RS17650 (OPU65_17650) comFC 3438805..3439539 (+) 735 WP_265625509.1 double zinc ribbon domain-containing protein Machinery gene
  OPU65_RS17655 (OPU65_17655) - 3439598..3440017 (+) 420 WP_265625510.1 TIGR03826 family flagellar region protein -
  OPU65_RS17660 (OPU65_17660) flgM 3440097..3440363 (+) 267 WP_265625511.1 flagellar biosynthesis anti-sigma factor FlgM -
  OPU65_RS17665 (OPU65_17665) - 3440382..3440858 (+) 477 WP_265625512.1 flagellar protein FlgN -
  OPU65_RS17670 (OPU65_17670) flgK 3440874..3442397 (+) 1524 WP_265625513.1 flagellar hook-associated protein FlgK -
  OPU65_RS17675 (OPU65_17675) flgL 3442408..3443319 (+) 912 WP_265625514.1 flagellar hook-associated protein FlgL -
  OPU65_RS17680 (OPU65_17680) - 3443369..3443935 (+) 567 WP_265625515.1 DUF6470 family protein -
  OPU65_RS17685 (OPU65_17685) fliW 3443957..3444388 (+) 432 WP_265625516.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27974.53 Da        Isoelectric Point: 8.8486

>NTDB_id=756389 OPU65_RS17650 WP_265625509.1 3438805..3439539(+) (comFC) [Bacillus paralicheniformis strain CamBx3]
MITRFAKAIEKGGNELYCLICEAPLLHSLSWRAFFFLRSEEKICRVCKDNFIRIEGTVCPKCGRPQESEELCGDCVKWEA
DPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPSFINAFHQYCRCTPAVLVPIPLSEERKAERGFNQAERL
ASLLKRPVMHPLIRIENEKQSKKSRKDRIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAADCLMTSGEAESVSSFT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=756389 OPU65_RS17650 WP_265625509.1 3438805..3439539(+) (comFC) [Bacillus paralicheniformis strain CamBx3]
ATGATAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGGAATGAACTGTATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGTGTGTAAAGACAATTTTATCAGGA
TCGAAGGAACCGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAGCTGTGCGGTGACTGCGTAAAATGGGAAGCT
GATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCCTCATTTATCAATGCTTTCCATCAATATTGCCGCT
GCACTCCTGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGCGGCTT
GCTTCCTTATTAAAAAGACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAAAGA
TCGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCAGTAAAGAATCTGGATATCATATTGATCGACGACTTGT
ATACGACAGGGGCGACGCTTCATCATGCCGCTGATTGTCTGATGACATCCGGTGAGGCAGAATCTGTATCATCATTTACA
TTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(18-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.165

97.131

0.516