Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OPU65_RS17630 Genome accession   NZ_CP110812
Coordinates   3435340..3436029 (+) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain CamBx3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3430340..3441029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS17605 (OPU65_17605) - 3430539..3431603 (+) 1065 WP_043926700.1 glycosyltransferase family 4 protein -
  OPU65_RS17610 (OPU65_17610) - 3431712..3432095 (+) 384 WP_265625507.1 hypothetical protein -
  OPU65_RS17615 (OPU65_17615) - 3432148..3433225 (-) 1078 Protein_3453 LCP family protein -
  OPU65_RS17620 (OPU65_17620) - 3433240..3433878 (-) 639 WP_023856394.1 YigZ family protein -
  OPU65_RS17625 (OPU65_17625) degS 3434101..3435258 (+) 1158 WP_265625508.1 histidine kinase Regulator
  OPU65_RS17630 (OPU65_17630) degU 3435340..3436029 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OPU65_RS17635 (OPU65_17635) - 3436149..3436991 (+) 843 WP_243941930.1 DegV family protein -
  OPU65_RS17640 (OPU65_17640) comFA 3437115..3438509 (+) 1395 WP_301441459.1 DEAD/DEAH box helicase Machinery gene
  OPU65_RS17645 (OPU65_17645) - 3438564..3438848 (+) 285 WP_243941932.1 late competence development ComFB family protein -
  OPU65_RS17650 (OPU65_17650) comFC 3438805..3439539 (+) 735 WP_265625509.1 double zinc ribbon domain-containing protein Machinery gene
  OPU65_RS17655 (OPU65_17655) - 3439598..3440017 (+) 420 WP_265625510.1 TIGR03826 family flagellar region protein -
  OPU65_RS17660 (OPU65_17660) flgM 3440097..3440363 (+) 267 WP_265625511.1 flagellar biosynthesis anti-sigma factor FlgM -
  OPU65_RS17665 (OPU65_17665) - 3440382..3440858 (+) 477 WP_265625512.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=756387 OPU65_RS17630 WP_003185730.1 3435340..3436029(+) (degU) [Bacillus paralicheniformis strain CamBx3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=756387 OPU65_RS17630 WP_003185730.1 3435340..3436029(+) (degU) [Bacillus paralicheniformis strain CamBx3]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGAGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCACGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTACCTGCATCCTAAGGTTACGCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACAAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGAGGAATCGG
CGAATCATTATTTATCAGCGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987