Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   OPU65_RS17625 Genome accession   NZ_CP110812
Coordinates   3434101..3435258 (+) Length   385 a.a.
NCBI ID   WP_265625508.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3429101..3440258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS17600 (OPU65_17600) tuaH 3429221..3430408 (+) 1188 WP_265625506.1 teichuronic acid biosynthesis protein TuaH -
  OPU65_RS17605 (OPU65_17605) - 3430539..3431603 (+) 1065 WP_043926700.1 glycosyltransferase family 4 protein -
  OPU65_RS17610 (OPU65_17610) - 3431712..3432095 (+) 384 WP_265625507.1 hypothetical protein -
  OPU65_RS17615 (OPU65_17615) - 3432148..3433225 (-) 1078 Protein_3453 LCP family protein -
  OPU65_RS17620 (OPU65_17620) - 3433240..3433878 (-) 639 WP_023856394.1 YigZ family protein -
  OPU65_RS17625 (OPU65_17625) degS 3434101..3435258 (+) 1158 WP_265625508.1 histidine kinase Regulator
  OPU65_RS17630 (OPU65_17630) degU 3435340..3436029 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OPU65_RS17635 (OPU65_17635) - 3436149..3436991 (+) 843 WP_243941930.1 DegV family protein -
  OPU65_RS17640 (OPU65_17640) comFA 3437115..3438509 (+) 1395 WP_301441459.1 DEAD/DEAH box helicase Machinery gene
  OPU65_RS17645 (OPU65_17645) - 3438564..3438848 (+) 285 WP_243941932.1 late competence development ComFB family protein -
  OPU65_RS17650 (OPU65_17650) comFC 3438805..3439539 (+) 735 WP_265625509.1 double zinc ribbon domain-containing protein Machinery gene
  OPU65_RS17655 (OPU65_17655) - 3439598..3440017 (+) 420 WP_265625510.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44579.30 Da        Isoelectric Point: 6.6066

>NTDB_id=756386 OPU65_RS17625 WP_265625508.1 3434101..3435258(+) (degS) [Bacillus paralicheniformis strain CamBx3]
MSVSKMDSKVLDSIIMKMLKIVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDTLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEDRRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=756386 OPU65_RS17625 WP_265625508.1 3434101..3435258(+) (degS) [Bacillus paralicheniformis strain CamBx3]
GTGAGTGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAATAGTTGACGGGAGCAAGGA
CGAGGTCTTTCAAATCGGAGAGCAGTCCCGTCAGCAATACGAAGGCTTGGTAGAAGAGCTGAAGCAAATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACACGTTGGAAGTGCATGCCCGCCATGCGCGAAACCGCTTGTCTGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTAGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGCCAGATTACCGTCGTCTTAAACTATTTAAATCAGGATCTGCGCCAGGTCGGCGTTCTTCTT
GAAGATGCGCAGGCCAAACAGGATTTCGGACTGCGGATTATCGAAGCCCAAGAGGAAGAAAGAAAAAGGGTCTCGAGAGA
AATCCACGACGGTCCTGCGCAAATGCTGGCCAACGTCATGATGAGATCTGAGCTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAAAAACCTCCGGCAAAACGTCAGGAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGGCCGATGGCTTTAGATGATTTAGGATTGATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATCCATTTCCAATGCATCGGAGAATCCGAAGATAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TTTTCCGGCTTGCACAGGAAGCAGTGACAAACGCCTTAAAACACTCCGAATCAACTGAAATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGCTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTTAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGATTTGCTCGAAGGCTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATTTTGATTAAAGTTCCGCTGTCTTTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894