Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OPU65_RS17640 Genome accession   NZ_CP110812
Coordinates   3437115..3438509 (+) Length   464 a.a.
NCBI ID   WP_301441459.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3432115..3443509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS17615 (OPU65_17615) - 3432148..3433225 (-) 1078 Protein_3453 LCP family protein -
  OPU65_RS17620 (OPU65_17620) - 3433240..3433878 (-) 639 WP_023856394.1 YigZ family protein -
  OPU65_RS17625 (OPU65_17625) degS 3434101..3435258 (+) 1158 WP_265625508.1 histidine kinase Regulator
  OPU65_RS17630 (OPU65_17630) degU 3435340..3436029 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OPU65_RS17635 (OPU65_17635) - 3436149..3436991 (+) 843 WP_243941930.1 DegV family protein -
  OPU65_RS17640 (OPU65_17640) comFA 3437115..3438509 (+) 1395 WP_301441459.1 DEAD/DEAH box helicase Machinery gene
  OPU65_RS17645 (OPU65_17645) - 3438564..3438848 (+) 285 WP_243941932.1 late competence development ComFB family protein -
  OPU65_RS17650 (OPU65_17650) comFC 3438805..3439539 (+) 735 WP_265625509.1 double zinc ribbon domain-containing protein Machinery gene
  OPU65_RS17655 (OPU65_17655) - 3439598..3440017 (+) 420 WP_265625510.1 TIGR03826 family flagellar region protein -
  OPU65_RS17660 (OPU65_17660) flgM 3440097..3440363 (+) 267 WP_265625511.1 flagellar biosynthesis anti-sigma factor FlgM -
  OPU65_RS17665 (OPU65_17665) - 3440382..3440858 (+) 477 WP_265625512.1 flagellar protein FlgN -
  OPU65_RS17670 (OPU65_17670) flgK 3440874..3442397 (+) 1524 WP_265625513.1 flagellar hook-associated protein FlgK -
  OPU65_RS17675 (OPU65_17675) flgL 3442408..3443319 (+) 912 WP_265625514.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52733.40 Da        Isoelectric Point: 9.8394

>NTDB_id=756388 OPU65_RS17640 WP_301441459.1 3437115..3438509(+) (comFA) [Bacillus paralicheniformis strain CamBx3]
MIHIEHPASYSRELRSCMEQRHLLKSELPFPKPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERSCFARYPCYRCNK
SCVYCRACVMMGRVSECTPLLTWRGHGIHEWAPVYTEWKGALSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELAPRFRQAFSGVEIAALYGGSSDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSEDMKKRAESGKPHTVRIPARFHRSPLPEPTLIWCGNWERGLKRKKVPSRLK
KWLFKHKELQHPVFLFVPSVPVLKTVVSLLKKELFLAEGVYAEDPERNEKVNRFRESKLEVLVTTTILERGVTVKKVQVG
VLGAESAIFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKAMNAARRHIQHMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=756388 OPU65_RS17640 WP_301441459.1 3437115..3438509(+) (comFA) [Bacillus paralicheniformis strain CamBx3]
GTGATTCACATCGAACATCCGGCATCCTATTCCCGTGAATTGCGGTCGTGTATGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGAAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCATGAGCGCTCATGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TCCTGCGTGTACTGCCGAGCCTGCGTCATGATGGGCAGGGTGAGCGAGTGTACCCCTCTGTTGACTTGGCGTGGGCATGG
CATACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGCACTTTCAGCCGGTCAGGAAAAAGCGGCCAAATCTATTA
TTGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGGTCGGGAAAAACAGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTCGAGCTTGCTCCGCG
GTTCCGCCAAGCCTTTTCAGGGGTGGAAATCGCCGCTTTATACGGAGGGAGCTCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACACATCTATTTAACCGCCAC
GCCTTCTGAGGATATGAAGAAAAGGGCTGAGAGCGGAAAGCCGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAAAAAAGTTCCTTCTCGCCTCAAA
AAATGGCTTTTTAAGCACAAAGAACTACAGCATCCGGTTTTTTTGTTCGTTCCCTCTGTCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAACTATTTCTCGCTGAAGGAGTTTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGTGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGATTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGAAGAGCCGGCAGGCACCCCGAGCA
CACAGATGGTGACGTCTGTTTCTTTCATCACGGCAGGACAAAGGCGATGAATGCGGCACGACGTCATATTCAACATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(317-424)

Type III restriction enzyme, res subunit (ResIII)

(122-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.205

98.707

0.565
  comFA Latilactobacillus sakei subsp. sakei 23K

39.858

91.379

0.364