Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OPU65_RS14840 Genome accession   NZ_CP110812
Coordinates   2842863..2843375 (+) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus paralicheniformis strain CamBx3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2837863..2848375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS14810 (OPU65_14810) - 2838021..2838869 (+) 849 WP_265625182.1 ParB/RepB/Spo0J family partition protein -
  OPU65_RS14815 (OPU65_14815) yyaC 2838906..2839523 (-) 618 WP_145652019.1 spore protease YyaC -
  OPU65_RS14820 (OPU65_14820) - 2839827..2840840 (+) 1014 WP_265625183.1 GerAB/ArcD/ProY family transporter -
  OPU65_RS14825 (OPU65_14825) - 2840928..2841134 (+) 207 WP_011201785.1 DUF951 domain-containing protein -
  OPU65_RS14830 (OPU65_14830) ychF 2841315..2842415 (+) 1101 WP_265625185.1 redox-regulated ATPase YchF -
  OPU65_RS14835 (OPU65_14835) rpsF 2842529..2842816 (+) 288 WP_020453642.1 30S ribosomal protein S6 -
  OPU65_RS14840 (OPU65_14840) ssbA 2842863..2843375 (+) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  OPU65_RS14845 (OPU65_14845) rpsR 2843427..2843666 (+) 240 WP_003178022.1 30S ribosomal protein S18 -
  OPU65_RS14850 (OPU65_14850) - 2843743..2845038 (-) 1296 WP_265625186.1 MFS transporter -
  OPU65_RS14855 (OPU65_14855) - 2845253..2846719 (+) 1467 WP_265625187.1 SulP family inorganic anion transporter -
  OPU65_RS14860 (OPU65_14860) - 2846737..2847156 (+) 420 WP_265625188.1 universal stress protein -
  OPU65_RS14865 (OPU65_14865) - 2847199..2847675 (-) 477 WP_265625189.1 spore coat protein -
  OPU65_RS14870 (OPU65_14870) - 2847831..2847971 (+) 141 WP_020453636.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=756379 OPU65_RS14840 WP_003178024.1 2842863..2843375(+) (ssbA) [Bacillus paralicheniformis strain CamBx3]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=756379 OPU65_RS14840 WP_003178024.1 2842863..2843375(+) (ssbA) [Bacillus paralicheniformis strain CamBx3]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCAAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCGAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAAGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCAGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAGAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAACGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382