Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OQB64_RS22875 Genome accession   NZ_CP110809
Coordinates   5183772..5184338 (-) Length   188 a.a.
NCBI ID   WP_266006421.1    Uniprot ID   -
Organism   Pseudomonas syringae strain MUP32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5178772..5189338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB64_RS22850 (OQB64_22850) - 5179026..5179919 (+) 894 WP_024648005.1 ABC transporter permease subunit -
  OQB64_RS22855 (OQB64_22855) ugpC 5179916..5181022 (+) 1107 WP_004394159.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  OQB64_RS22860 (OQB64_22860) - 5181029..5181790 (+) 762 WP_003317090.1 glycerophosphoryl diester phosphodiesterase -
  OQB64_RS22865 (OQB64_22865) - 5181787..5182530 (+) 744 WP_003317091.1 inositol monophosphatase family protein -
  OQB64_RS22870 (OQB64_22870) - 5182530..5183642 (+) 1113 WP_024648004.1 endo-1,4-beta-xylanase -
  OQB64_RS22875 (OQB64_22875) ssb 5183772..5184338 (-) 567 WP_266006421.1 single-stranded DNA-binding protein Machinery gene
  OQB64_RS22880 (OQB64_22880) - 5184348..5185742 (-) 1395 WP_003426593.1 MFS transporter -
  OQB64_RS22885 (OQB64_22885) uvrA 5185872..5188706 (+) 2835 WP_003317094.1 excinuclease ABC subunit UvrA -
  OQB64_RS22890 (OQB64_22890) bfr 5188801..5189265 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20902.02 Da        Isoelectric Point: 5.9404

>NTDB_id=756327 OQB64_RS22875 WP_266006421.1 5183772..5184338(-) (ssb) [Pseudomonas syringae strain MUP32]
MARGVNKVILVGTCGQDPEVRYLPNGTAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=756327 OQB64_RS22875 WP_266006421.1 5183772..5184338(-) (ssb) [Pseudomonas syringae strain MUP32]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGCAC
TGCGGTGACCAACCTGAGTCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGAGCGGGCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGCTGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGCTGCAAACCCGCGAGTGGGAAAAGGACGGGATCAAACGCTACACCACTGAAATCGTCGTGGACATGCAGGGCAC
CATGCAGCTGCTCGGTGGCCGTCCACAGGGCGACTCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.729

100

0.569
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.473
  ssb Neisseria meningitidis MC58

44.385

99.468

0.441
  ssb Neisseria gonorrhoeae MS11

44.385

99.468

0.441