Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OQB65_RS23190 Genome accession   NZ_CP110808
Coordinates   5354705..5355271 (-) Length   188 a.a.
NCBI ID   WP_003317093.1    Uniprot ID   A0A0P9GWC5
Organism   Pseudomonas syringae strain MUP20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5349705..5360271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB65_RS23160 (OQB65_23160) - 5350652..5350924 (-) 273 WP_074997161.1 hypothetical protein -
  OQB65_RS23165 (OQB65_23165) - 5350927..5351190 (-) 264 WP_074997160.1 hypothetical protein -
  OQB65_RS23170 (OQB65_23170) - 5351190..5351405 (-) 216 WP_074997159.1 ribbon-helix-helix protein, CopG family -
  OQB65_RS23175 (OQB65_23175) - 5351506..5352618 (+) 1113 WP_080489955.1 SDH family Clp fold serine proteinase -
  OQB65_RS23180 (OQB65_23180) - 5353038..5353982 (-) 945 Protein_4595 IS5 family transposase -
  OQB65_RS23185 (OQB65_23185) - 5354271..5354515 (+) 245 Protein_4596 hypothetical protein -
  OQB65_RS23190 (OQB65_23190) ssb 5354705..5355271 (-) 567 WP_003317093.1 single-stranded DNA-binding protein Machinery gene
  OQB65_RS23195 (OQB65_23195) - 5355281..5356675 (-) 1395 WP_266000488.1 MFS transporter -
  OQB65_RS23200 (OQB65_23200) uvrA 5356805..5359639 (+) 2835 WP_003317094.1 excinuclease ABC subunit UvrA -
  OQB65_RS23205 (OQB65_23205) bfr 5359734..5360198 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20917.05 Da        Isoelectric Point: 5.9404

>NTDB_id=756296 OQB65_RS23190 WP_003317093.1 5354705..5355271(-) (ssb) [Pseudomonas syringae strain MUP20]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=756296 OQB65_RS23190 WP_003317093.1 5354705..5355271(-) (ssb) [Pseudomonas syringae strain MUP20]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGCCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTACGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9GWC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.473
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447