Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OQB66_RS21925 | Genome accession | NZ_CP110807 |
| Coordinates | 5145988..5146554 (-) | Length | 188 a.a. |
| NCBI ID | WP_003317093.1 | Uniprot ID | A0A0P9GWC5 |
| Organism | Pseudomonas syringae strain MUP17 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 5100361..5150031 | 5145988..5146554 | within | 0 |
Gene organization within MGE regions
Location: 5100361..5150031
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQB66_RS21735 (OQB66_21735) | - | 5101327..5102088 (+) | 762 | WP_003317090.1 | glycerophosphoryl diester phosphodiesterase | - |
| OQB66_RS21740 (OQB66_21740) | - | 5102085..5102828 (+) | 744 | WP_003317091.1 | inositol monophosphatase family protein | - |
| OQB66_RS21745 (OQB66_21745) | - | 5102828..5103940 (+) | 1113 | WP_266064950.1 | endo-1,4-beta-xylanase | - |
| OQB66_RS21750 (OQB66_21750) | - | 5104697..5105485 (-) | 789 | WP_058445244.1 | DUF6615 family protein | - |
| OQB66_RS21755 (OQB66_21755) | - | 5105669..5106655 (-) | 987 | WP_266064951.1 | hypothetical protein | - |
| OQB66_RS21760 (OQB66_21760) | - | 5106652..5108175 (-) | 1524 | WP_266064952.1 | AAA family ATPase | - |
| OQB66_RS21765 (OQB66_21765) | - | 5109626..5110660 (+) | 1035 | WP_058445250.1 | hypothetical protein | - |
| OQB66_RS21770 (OQB66_21770) | - | 5110792..5111016 (+) | 225 | WP_058445252.1 | hypothetical protein | - |
| OQB66_RS21775 (OQB66_21775) | - | 5111198..5115340 (-) | 4143 | WP_266064953.1 | ATP-binding protein | - |
| OQB66_RS21780 (OQB66_21780) | - | 5115482..5116643 (+) | 1162 | Protein_4314 | IS3 family transposase | - |
| OQB66_RS21785 (OQB66_21785) | - | 5117041..5118576 (-) | 1536 | WP_266064955.1 | nucleotidyltransferase | - |
| OQB66_RS21790 (OQB66_21790) | - | 5118579..5119133 (-) | 555 | WP_122586357.1 | SLATT domain-containing protein | - |
| OQB66_RS21795 (OQB66_21795) | - | 5119452..5120024 (+) | 573 | WP_266064956.1 | hypothetical protein | - |
| OQB66_RS21800 (OQB66_21800) | - | 5120242..5121456 (+) | 1215 | WP_024669024.1 | PIN domain-containing protein | - |
| OQB66_RS21805 (OQB66_21805) | - | 5121473..5121916 (-) | 444 | WP_266064957.1 | hypothetical protein | - |
| OQB66_RS21810 (OQB66_21810) | - | 5122496..5123569 (+) | 1074 | WP_266064958.1 | hypothetical protein | - |
| OQB66_RS21815 (OQB66_21815) | - | 5123604..5123836 (+) | 233 | Protein_4321 | hypothetical protein | - |
| OQB66_RS21820 (OQB66_21820) | - | 5123826..5124035 (+) | 210 | WP_020308633.1 | hypothetical protein | - |
| OQB66_RS21825 (OQB66_21825) | - | 5124032..5124508 (+) | 477 | WP_020308632.1 | hypothetical protein | - |
| OQB66_RS21830 (OQB66_21830) | - | 5124631..5125092 (+) | 462 | WP_266066902.1 | SH3 domain-containing protein | - |
| OQB66_RS21835 (OQB66_21835) | - | 5125182..5126222 (+) | 1041 | WP_266064960.1 | DUF4062 domain-containing protein | - |
| OQB66_RS21840 (OQB66_21840) | - | 5126267..5126722 (-) | 456 | WP_266064961.1 | helix-turn-helix domain-containing protein | - |
| OQB66_RS21845 (OQB66_21845) | - | 5126881..5127276 (+) | 396 | WP_338129210.1 | DUF6957 family protein | - |
| OQB66_RS21850 (OQB66_21850) | - | 5127317..5127787 (+) | 471 | WP_266064965.1 | hypothetical protein | - |
| OQB66_RS21855 (OQB66_21855) | - | 5127790..5128179 (+) | 390 | WP_266064967.1 | hypothetical protein | - |
| OQB66_RS21860 (OQB66_21860) | - | 5128477..5129349 (+) | 873 | WP_266064969.1 | restriction endonuclease | - |
| OQB66_RS21865 (OQB66_21865) | - | 5129392..5130588 (+) | 1197 | WP_266064971.1 | hypothetical protein | - |
| OQB66_RS21870 (OQB66_21870) | - | 5130906..5132180 (+) | 1275 | WP_266064972.1 | HNH endonuclease | - |
| OQB66_RS21875 (OQB66_21875) | - | 5132666..5133034 (+) | 369 | WP_266064974.1 | hypothetical protein | - |
| OQB66_RS21880 (OQB66_21880) | - | 5133552..5134484 (-) | 933 | WP_266064976.1 | hypothetical protein | - |
| OQB66_RS21885 (OQB66_21885) | - | 5134688..5136295 (+) | 1608 | WP_266066903.1 | ATP-dependent nuclease | - |
| OQB66_RS21890 (OQB66_21890) | - | 5136288..5137358 (+) | 1071 | WP_266064977.1 | UvrD-helicase domain-containing protein | - |
| OQB66_RS21895 (OQB66_21895) | - | 5137995..5140259 (-) | 2265 | WP_266064979.1 | AAA family ATPase | - |
| OQB66_RS21900 (OQB66_21900) | - | 5140256..5140687 (-) | 432 | WP_099488906.1 | VPA1267 family protein | - |
| OQB66_RS21905 (OQB66_21905) | - | 5140687..5141103 (-) | 417 | WP_266064982.1 | hypothetical protein | - |
| OQB66_RS21910 (OQB66_21910) | - | 5141103..5143100 (-) | 1998 | WP_266064984.1 | integrase | - |
| OQB66_RS21915 (OQB66_21915) | - | 5143100..5144638 (-) | 1539 | WP_266064986.1 | site-specific integrase | - |
| OQB66_RS21920 (OQB66_21920) | - | 5144641..5145771 (-) | 1131 | WP_266064988.1 | tyrosine-type recombinase/integrase | - |
| OQB66_RS21925 (OQB66_21925) | ssb | 5145988..5146554 (-) | 567 | WP_003317093.1 | single-stranded DNA-binding protein | Machinery gene |
| OQB66_RS21930 (OQB66_21930) | - | 5146564..5147958 (-) | 1395 | WP_266064990.1 | MFS transporter | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20917.05 Da Isoelectric Point: 5.9404
>NTDB_id=756265 OQB66_RS21925 WP_003317093.1 5145988..5146554(-) (ssb) [Pseudomonas syringae strain MUP17]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 567 bp
>NTDB_id=756265 OQB66_RS21925 WP_003317093.1 5145988..5146554(-) (ssb) [Pseudomonas syringae strain MUP17]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTCGACAGCTTTGATGATGATATTCC
GTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTCGACAGCTTTGATGATGATATTCC
GTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.564 |
| ssb | Glaesserella parasuis strain SC1401 |
47.09 |
100 |
0.473 |
| ssb | Neisseria meningitidis MC58 |
44.92 |
99.468 |
0.447 |
| ssb | Neisseria gonorrhoeae MS11 |
44.92 |
99.468 |
0.447 |