Detailed information NTG0075625

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KI237_RS09310
• Genome accession: NZ_AP021901
• Coordinates: 2057028..2059274 (+)
• Length: 748 a.a.
• NCBI ID: WP_212799566.1
• Uniprot ID: -
• Organism: Pseudomonas sp. St316
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2052028..2064274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI237_RS09285 (PHLH4_18430)	-	2052998..2053657 (+)	660	WP_212799562.1	transglutaminase family protein	-
KI237_RS09290 (PHLH4_18440)	-	2053702..2054325 (+)	624	WP_212799563.1	glutathione S-transferase	-
KI237_RS09295 (PHLH4_18450)	-	2054462..2055394 (+)	933	WP_212799564.1	ABC transporter ATP-binding protein	-
KI237_RS09300 (PHLH4_18460)	-	2055397..2056176 (+)	780	WP_212800577.1	ABC transporter permease	-
KI237_RS09305 (PHLH4_18470)	-	2056368..2056883 (-)	516	WP_212799565.1	DUF2062 domain-containing protein	-
KI237_RS09310 (PHLH4_18480)	comA	2057028..2059274 (+)	2247	WP_212799566.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KI237_RS09315 (PHLH4_18490)	exbB	2059370..2060005 (+)	636	WP_212799567.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KI237_RS09320 (PHLH4_18500)	-	2060002..2060430 (+)	429	WP_212799568.1	biopolymer transporter ExbD	-
KI237_RS09325 (PHLH4_18510)	lpxK	2060430..2061440 (+)	1011	WP_212799569.1	tetraacyldisaccharide 4'-kinase	-
KI237_RS09330 (PHLH4_18520)	-	2061464..2061649 (+)	186	WP_003179363.1	Trm112 family protein	-
KI237_RS09335 (PHLH4_18530)	kdsB	2061646..2062410 (+)	765	WP_212799570.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KI237_RS09340 (PHLH4_18540)	-	2062410..2062874 (+)	465	WP_212799571.1	low molecular weight protein-tyrosine-phosphatase	-
KI237_RS09345 (PHLH4_18550)	murB	2062871..2063890 (+)	1020	WP_212799572.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81054.18 Da
• Isoelectric Point: 9.6487

>NTDB_id=75625 KI237_RS09310 WP_212799566.1 2057028..2059274(+) (comA) [Pseudomonas sp. St316]
MRTGLVALALGLLAPIFLPALPPLWLIAAMPVLALMALPFRTYPLGFFLFGLAWACLSAQFALDDRLPIALDGETRWVEG
RVVGLPQQGEGVVRFELADVHSRRTRLPTAMRLAWFGGPPVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGRLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFSGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPTAL
LGTALLPVPLIGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVPTWALGIAAFGAFLLLLPKGLPLRVLGWPMVLLMV
YPPQEHLPPGRAEVWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
RAVRNGLPTMEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDAHAE
RALLDEPLALPVQWLAAPHHGSRSSSSMALLSRLQPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLQL
GAFELPRSEAGHRRYWRDPPGVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=75625 KI237_RS09310 WP_212799566.1 2057028..2059274(+) (comA) [Pseudomonas sp. St316]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGTTGTGGCTGAT
TGCAGCCATGCCGGTACTGGCGCTGATGGCGTTGCCGTTTCGAACCTATCCGCTGGGTTTCTTCCTGTTCGGGTTGGCCT
GGGCCTGTCTGTCGGCGCAGTTTGCGCTGGACGATCGGTTACCCATCGCCCTCGACGGCGAAACCCGCTGGGTCGAGGGG
CGAGTGGTCGGTTTGCCGCAACAGGGCGAAGGCGTGGTGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGGCT
ACCGACGGCGATGCGCCTCGCCTGGTTCGGTGGTCCGCCGGTCAACAGCGGCGAGCGATGGCGATTGGCCGTGAAGCTCA
AGCGGCCCAGCGGGCTGCTGAACCCACACGGCTTTGACTATGCCGCCTGGTTGCTGAGCCGCGGCATCGGCGCGACCGGT
ACGATCAAGGATGGCCGTCTCCTGCAAGCGGCCCGGGGTGCCTGGCGCGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCGCTGGTGCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACTGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTTTACCTGTTG
GTGGCCGGTGCGGCCCGTTATGGCCTGTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGACGGGCCTGCGCGATGATCGGTCTGGTGTTGCTGT
GGCGCCTGCGTTTCAAACAGCCGGATCCGTGGTGGGCATGGCTGCTGGCCTTTTCCGGGGTGCTGGTGTTCGATCCGCTC
GCCAGCTTGCGACCGGGGTTCTGGTTGTCGTTTGCCGCTGTCGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
TTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGCTGGTTGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGCT
TGCCAGTCAGCCTCAGCGGGCCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGACAGCGCTG
CTTGGCACGGCGTTGTTGCCGGTGCCGCTCATTGGCGAAGGCTTGCTGTGGATTGCCGGCGGACTGCTCGATCTGTTGTT
CAAGGGGCTGACGCTGGTAGCCGGACGAATGCCTGCCTGGGTTCCGGCCGCAGTCCCGACCTGGGCCTTGGGTATCGCTG
CCTTCGGTGCTTTTTTACTGTTGTTGCCCAAAGGTCTGCCACTACGTGTACTGGGGTGGCCAATGGTGTTGCTGATGGTT
TATCCACCGCAAGAACACCTGCCACCAGGGCGAGCCGAGGTCTGGCAACTGGACGTGGGCCAAGGGTTGGCGGTGCTGGT
GCGGACCCGCCGGCACACCCTGCTATATGACGCCGGGCCGCGCTTTGGCGAGGCCGATGTGGGCGAGCGGGTCGTCCTGC
CAACCTTGCGCAAACTGGGTGTGCGTGGCTTGGACCTGATGTTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTACCGACGATGGAGGTGATCAGTGGCGATCCCGACGCGCTGCCCGCTGAGCTGCTGGCCGG
GCCTTGCGACAGTGGCCGGCGCTGGGAATGGGACGGCGTCGGGTTCGAGCTGTGGCGGTGGGCCTCTGCCGTTGAAAGCA
ACCAGAAATCCTGTGTCCTGCTGGTGGAGGCCGGCGGTGAACGCCTGCTCCTGACCGGCGATATCGACGCCCACGCCGAA
CGCGCCTTGCTCGACGAGCCCCTGGCGCTACCGGTCCAGTGGCTGGCCGCGCCGCATCATGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCACGGCTGCAACCGCATTCGGTGTTGATTTCCCGAGGCCAGGGCAACGCGTTCGGCCACCCCCATC
CCCAAGTGATGGCCCGCTATCGACGCTCGGGCCTGGCGATCTACGACAGTGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGGGCTTTCGAGCTGCCGCGCTCCGAGGCCGGGCACCGCCGCTACTGGCGTGATCCGCCAGGCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.453	95.722	0.588
comA	Ralstonia pseudosolanacearum GMI1000	31.995	100	0.362