Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KI237_RS09315 Genome accession   NZ_AP021901
Coordinates   2059370..2060005 (+) Length   211 a.a.
NCBI ID   WP_212799567.1    Uniprot ID   -
Organism   Pseudomonas sp. St316     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054370..2065005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI237_RS09295 (PHLH4_18450) - 2054462..2055394 (+) 933 WP_212799564.1 ABC transporter ATP-binding protein -
  KI237_RS09300 (PHLH4_18460) - 2055397..2056176 (+) 780 WP_212800577.1 ABC transporter permease -
  KI237_RS09305 (PHLH4_18470) - 2056368..2056883 (-) 516 WP_212799565.1 DUF2062 domain-containing protein -
  KI237_RS09310 (PHLH4_18480) comA 2057028..2059274 (+) 2247 WP_212799566.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KI237_RS09315 (PHLH4_18490) exbB 2059370..2060005 (+) 636 WP_212799567.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KI237_RS09320 (PHLH4_18500) - 2060002..2060430 (+) 429 WP_212799568.1 biopolymer transporter ExbD -
  KI237_RS09325 (PHLH4_18510) lpxK 2060430..2061440 (+) 1011 WP_212799569.1 tetraacyldisaccharide 4'-kinase -
  KI237_RS09330 (PHLH4_18520) - 2061464..2061649 (+) 186 WP_003179363.1 Trm112 family protein -
  KI237_RS09335 (PHLH4_18530) kdsB 2061646..2062410 (+) 765 WP_212799570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KI237_RS09340 (PHLH4_18540) - 2062410..2062874 (+) 465 WP_212799571.1 low molecular weight protein-tyrosine-phosphatase -
  KI237_RS09345 (PHLH4_18550) murB 2062871..2063890 (+) 1020 WP_212799572.1 UDP-N-acetylmuramate dehydrogenase -
  KI237_RS09350 (PHLH4_18560) - 2064156..2064626 (+) 471 WP_212799573.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22828.92 Da        Isoelectric Point: 8.0840

>NTDB_id=75626 KI237_RS09315 WP_212799567.1 2059370..2060005(+) (exbB) [Pseudomonas sp. St316]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=75626 KI237_RS09315 WP_212799567.1 2059370..2060005(+) (exbB) [Pseudomonas sp. St316]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCATTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCGCTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGGACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGAGCACCAATGCCGCCGTGCTGGCGGGGGGCATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCATCCGTGTTCTTCCACCGCTTCCTGCAACGGCGCGTCGACGAGTTGGTGGTCGGCAT
GGAGCAAGAAGCGATCAAGCTGGTCGAGGTGGTGCAAGGTGACCGCGATGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment