Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OPZ46_RS28560 Genome accession   NZ_CP110782
Coordinates   6241457..6242002 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida DOT-T1E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6236457..6247002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPZ46_RS28545 (OPZ46_28545) bfr 6236552..6237016 (+) 465 WP_003255449.1 bacterioferritin -
  OPZ46_RS28550 (OPZ46_28550) uvrA 6237089..6239923 (-) 2835 WP_014860903.1 excinuclease ABC subunit UvrA -
  OPZ46_RS28555 (OPZ46_28555) - 6240053..6241447 (+) 1395 WP_014860904.1 MFS transporter -
  OPZ46_RS28560 (OPZ46_28560) ssb 6241457..6242002 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  OPZ46_RS28565 (OPZ46_28565) - 6242093..6243475 (-) 1383 WP_265536587.1 PLP-dependent aminotransferase family protein -
  OPZ46_RS28570 (OPZ46_28570) - 6243676..6244461 (+) 786 WP_003255443.1 sulfite exporter TauE/SafE family protein -
  OPZ46_RS28575 (OPZ46_28575) - 6244483..6245244 (+) 762 WP_003255442.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=756077 OPZ46_RS28560 WP_003255446.1 6241457..6242002(+) (ssb) [Pseudomonas putida DOT-T1E]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=756077 OPZ46_RS28560 WP_003255446.1 6241457..6242002(+) (ssb) [Pseudomonas putida DOT-T1E]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGTTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCATACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492