Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BBP27_RS04890 Genome accession   NZ_CP110721
Coordinates   1028498..1029025 (-) Length   175 a.a.
NCBI ID   WP_188211316.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1027587..1028387 1028498..1029025 flank 111


Gene organization within MGE regions


Location: 1027587..1029025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS04890 ssb 1028498..1029025 (-) 528 WP_188211316.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19666.69 Da        Isoelectric Point: 5.8022

>NTDB_id=755999 BBP27_RS04890 WP_188211316.1 1028498..1029025(-) (ssb) [Neisseria sp. RH3002v2g]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGSRNDNSGGAPYDDGYNQGSHSSQNSYQQAPQQQYQSAPAQEPPAAPARRPTPA
QPTAPVEDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=755999 BBP27_RS04890 WP_188211316.1 1028498..1029025(-) (ssb) [Neisseria sp. RH3002v2g]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGTCTCGGCCGCGACCCGGAGGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGCCAATACCTGCGTAAAGGCAGCCAAGTGTATCTGGAAGGCCGTATC
CAAAGCCGTAAATACCAAGGCAAAGACGGTATCGAACGCACCGCTTACGACATCATCGCCAATGAGATGAAAATGCTCGG
CAGCCGCAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCAGTCATTCAAGCCAAAACAGTTACC
AACAAGCGCCTCAACAGCAATATCAATCTGCCCCGGCGCAAGAGCCCCCGGCTGCTCCGGCCCGTCGTCCTACACCGGCA
CAACCGACCGCTCCGGTTGAGGATATCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.667

100

0.84
  ssb Neisseria meningitidis MC58

81.111

100

0.834
  ssb Vibrio cholerae strain A1552

49.438

100

0.503
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.486