Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OPR71_RS01580 Genome accession   NZ_CP110670
Coordinates   337693..338286 (+) Length   197 a.a.
NCBI ID   WP_005381322.1    Uniprot ID   A0AAW9BKV9
Organism   Vibrio alginolyticus strain AUSMDU00064140     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332693..343286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR71_RS01565 (OPR71_01565) - 333419..335980 (-) 2562 WP_025768081.1 penicillin-binding protein 1A -
  OPR71_RS01570 (OPR71_01570) pilM 336125..337141 (+) 1017 WP_005382774.1 type IV pilus biogenesis protein PilM Machinery gene
  OPR71_RS01575 (OPR71_01575) pilN 337125..337700 (+) 576 WP_167415488.1 PilN domain-containing protein Machinery gene
  OPR71_RS01580 (OPR71_01580) pilO 337693..338286 (+) 594 WP_005381322.1 type 4a pilus biogenesis protein PilO Machinery gene
  OPR71_RS01585 (OPR71_01585) pilP 338276..338791 (+) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  OPR71_RS01590 (OPR71_01590) pilQ 338817..340562 (+) 1746 WP_005382765.1 type IV pilus secretin PilQ Machinery gene
  OPR71_RS01595 (OPR71_01595) aroK 340750..341268 (+) 519 WP_005381319.1 shikimate kinase AroK -
  OPR71_RS01600 (OPR71_01600) aroB 341301..342401 (+) 1101 WP_258480306.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23015.53 Da        Isoelectric Point: 5.0885

>NTDB_id=755892 OPR71_RS01580 WP_005381322.1 337693..338286(+) (pilO) [Vibrio alginolyticus strain AUSMDU00064140]
MVDWQDLEIDEMAEWPLLPQIVVIALLIMVIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=755892 OPR71_RS01580 WP_005381322.1 337693..338286(+) (pilO) [Vibrio alginolyticus strain AUSMDU00064140]
GTGGTTGATTGGCAGGATCTCGAAATCGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCGCTTCT
GATCATGGTGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTCC
CTTTAAACATTGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

87.368

96.447

0.843
  pilO Vibrio cholerae strain A1552

70.681

96.954

0.685