Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OPR71_RS01575 Genome accession   NZ_CP110670
Coordinates   337125..337700 (+) Length   191 a.a.
NCBI ID   WP_167415488.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain AUSMDU00064140     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332125..342700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR71_RS01560 (OPR71_01560) oxyR 332454..333365 (+) 912 WP_005381326.1 DNA-binding transcriptional regulator OxyR -
  OPR71_RS01565 (OPR71_01565) - 333419..335980 (-) 2562 WP_025768081.1 penicillin-binding protein 1A -
  OPR71_RS01570 (OPR71_01570) pilM 336125..337141 (+) 1017 WP_005382774.1 type IV pilus biogenesis protein PilM Machinery gene
  OPR71_RS01575 (OPR71_01575) pilN 337125..337700 (+) 576 WP_167415488.1 PilN domain-containing protein Machinery gene
  OPR71_RS01580 (OPR71_01580) pilO 337693..338286 (+) 594 WP_005381322.1 type 4a pilus biogenesis protein PilO Machinery gene
  OPR71_RS01585 (OPR71_01585) pilP 338276..338791 (+) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  OPR71_RS01590 (OPR71_01590) pilQ 338817..340562 (+) 1746 WP_005382765.1 type IV pilus secretin PilQ Machinery gene
  OPR71_RS01595 (OPR71_01595) aroK 340750..341268 (+) 519 WP_005381319.1 shikimate kinase AroK -
  OPR71_RS01600 (OPR71_01600) aroB 341301..342401 (+) 1101 WP_258480306.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22348.83 Da        Isoelectric Point: 7.4657

>NTDB_id=755891 OPR71_RS01575 WP_167415488.1 337125..337700(+) (pilN) [Vibrio alginolyticus strain AUSMDU00064140]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAVGIQWGVGKFFEYQQDQQQDRLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=755891 OPR71_RS01575 WP_167415488.1 337125..337700(+) (pilN) [Vibrio alginolyticus strain AUSMDU00064140]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAATCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTGTTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGATC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATTTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.199

100

0.822
  pilN Vibrio cholerae strain A1552

62.712

92.67

0.581