Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ONZ57_RS20310 Genome accession   NZ_CP110654
Coordinates   4274924..4275514 (-) Length   196 a.a.
NCBI ID   WP_005316531.1    Uniprot ID   T0QMQ0
Organism   Aeromonas salmonicida strain AS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4269924..4280514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ57_RS20275 (ONZ57_20280) - 4270496..4270897 (-) 402 Protein_3915 IS1 family transposase -
  ONZ57_RS20280 (ONZ57_20285) - 4271090..4271374 (-) 285 WP_011899186.1 DUF3811 domain-containing protein -
  ONZ57_RS20285 (ONZ57_20290) - 4271547..4272158 (-) 612 Protein_3917 cation diffusion facilitator family transporter -
  ONZ57_RS20290 (ONZ57_20295) - 4272249..4273165 (+) 917 Protein_3918 IS5-like element ISAs4 family transposase -
  ONZ57_RS20295 (ONZ57_20300) - 4273215..4273343 (-) 129 Protein_3919 cation transporter -
  ONZ57_RS20300 (ONZ57_20305) - 4273796..4273921 (+) 126 WP_011899188.1 hypothetical protein -
  ONZ57_RS20305 (ONZ57_20310) - 4273997..4274755 (-) 759 WP_005316528.1 substrate-binding periplasmic protein -
  ONZ57_RS20310 (ONZ57_20315) ssb 4274924..4275514 (-) 591 WP_005316531.1 single-stranded DNA-binding protein Machinery gene
  ONZ57_RS20315 (ONZ57_20320) - 4276034..4276666 (+) 633 WP_017412640.1 LuxR C-terminal-related transcriptional regulator -
  ONZ57_RS20320 (ONZ57_20325) uvrA 4276762..4279590 (+) 2829 WP_005316537.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21485.97 Da        Isoelectric Point: 5.9301

>NTDB_id=755766 ONZ57_RS20310 WP_005316531.1 4274924..4275514(-) (ssb) [Aeromonas salmonicida strain AS1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEVLVDSFSGVMQMLGGRPQGGAGQNMGGQPQAQGNWGQPQQGMPAQQPVNQARPAAAPQQ
NMQQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=755766 ONZ57_RS20310 WP_005316531.1 4274924..4275514(-) (ssb) [Aeromonas salmonicida strain AS1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGACAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGTGTGGTATTCATGGGCAAGCTGGCCGAAGTGGCTGGTGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTC
GAAGGGAAACTGCAGACTCGCAAATGGCAGGATCAAGGTGGCCAAGAGCGTTATACCACCGAAGTGCTGGTAGACAGCTT
CAGTGGCGTGATGCAGATGCTGGGTGGTCGCCCGCAAGGTGGCGCAGGCCAAAACATGGGTGGCCAACCTCAAGCGCAAG
GCAACTGGGGTCAACCGCAACAAGGCATGCCAGCCCAGCAGCCGGTAAACCAGGCTCGTCCTGCCGCCGCACCGCAGCAG
AACATGCAGCAGCCACAAGGCGGTTATGGTCGTCCGGCCCAGCAGCCCCAGTCAGCACCGCCTGTCTACAACGAGCCGCC
GATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0QMQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.172

100

0.679
  ssb Glaesserella parasuis strain SC1401

54.404

98.469

0.536
  ssb Neisseria meningitidis MC58

48.187

98.469

0.474
  ssb Neisseria gonorrhoeae MS11

47.668

98.469

0.469