Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ONZ54_RS01645 Genome accession   NZ_CP110645
Coordinates   327992..328582 (-) Length   196 a.a.
NCBI ID   WP_005316531.1    Uniprot ID   T0QMQ0
Organism   Aeromonas salmonicida strain AS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 322992..333582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ54_RS01620 (ONZ54_01620) cspA 324381..324593 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  ONZ54_RS01625 (ONZ54_01625) - 325076..325360 (-) 285 WP_011899186.1 DUF3811 domain-containing protein -
  ONZ54_RS01630 (ONZ54_01630) - 325533..326411 (-) 879 WP_034524357.1 cation diffusion facilitator family transporter -
  ONZ54_RS01635 (ONZ54_01635) - 326864..326989 (+) 126 WP_011899188.1 hypothetical protein -
  ONZ54_RS01640 (ONZ54_01640) - 327065..327823 (-) 759 WP_271787326.1 substrate-binding periplasmic protein -
  ONZ54_RS01645 (ONZ54_01645) ssb 327992..328582 (-) 591 WP_005316531.1 single-stranded DNA-binding protein Machinery gene
  ONZ54_RS01650 (ONZ54_01650) - 329102..329764 (+) 663 WP_087756678.1 LuxR C-terminal-related transcriptional regulator -
  ONZ54_RS01655 (ONZ54_01655) uvrA 329860..332688 (+) 2829 WP_087756677.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21485.97 Da        Isoelectric Point: 5.9301

>NTDB_id=755610 ONZ54_RS01645 WP_005316531.1 327992..328582(-) (ssb) [Aeromonas salmonicida strain AS3]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEVLVDSFSGVMQMLGGRPQGGAGQNMGGQPQAQGNWGQPQQGMPAQQPVNQARPAAAPQQ
NMQQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=755610 ONZ54_RS01645 WP_005316531.1 327992..328582(-) (ssb) [Aeromonas salmonicida strain AS3]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGACAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGTGTGGTATTCATGGGCAAGCTGGCCGAAGTGGCTGGTGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTC
GAAGGGAAACTGCAGACTCGCAAATGGCAGGATCAAGGTGGCCAAGAGCGTTATACCACCGAAGTGCTGGTAGACAGCTT
TAGTGGCGTGATGCAGATGCTGGGTGGTCGCCCGCAAGGTGGCGCAGGCCAAAACATGGGTGGCCAACCTCAAGCGCAGG
GCAACTGGGGCCAACCGCAGCAAGGCATGCCAGCCCAGCAGCCGGTAAACCAGGCTCGTCCTGCCGCCGCACCGCAGCAG
AACATGCAGCAGCCACAAGGCGGTTATGGTCGTCCGGCCCAGCAGCCCCAGTCAGCACCGCCTGTCTACAACGAGCCGCC
GATGGACTTCGACGACGACATCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0QMQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.172

100

0.679
  ssb Glaesserella parasuis strain SC1401

54.404

98.469

0.536
  ssb Neisseria meningitidis MC58

48.187

98.469

0.474
  ssb Neisseria gonorrhoeae MS11

47.668

98.469

0.469