Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OKW98_RS04475 Genome accession   NZ_CP110644
Coordinates   967459..968001 (+) Length   180 a.a.
NCBI ID   WP_265388111.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 962459..973001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS04460 (OKW98_04460) bfr 962492..962956 (+) 465 WP_265388109.1 bacterioferritin -
  OKW98_RS04465 (OKW98_04465) uvrA 963031..965865 (-) 2835 WP_265389646.1 excinuclease ABC subunit UvrA -
  OKW98_RS04470 (OKW98_04470) - 966055..967449 (+) 1395 WP_265388110.1 MFS transporter -
  OKW98_RS04475 (OKW98_04475) ssb 967459..968001 (+) 543 WP_265388111.1 single-stranded DNA-binding protein Machinery gene
  OKW98_RS04480 (OKW98_04480) - 968094..968573 (-) 480 WP_265388112.1 nuclear transport factor 2 family protein -
  OKW98_RS04485 (OKW98_04485) - 968623..969201 (-) 579 WP_265388113.1 TetR/AcrR family transcriptional regulator -
  OKW98_RS04490 (OKW98_04490) - 969259..971613 (-) 2355 WP_265388114.1 FdhF/YdeP family oxidoreductase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19870.06 Da        Isoelectric Point: 5.9505

>NTDB_id=755589 OKW98_RS04475 WP_265388111.1 967459..968001(+) (ssb) [Pseudomonas sp. KU26590]
MARGVNKVILVGTCGQDPEVRYMPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGEGAPQGQGGGGYQNSQNSAPRPQQQARPQSAPQPQPQRESRPA
PQQAPQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=755589 OKW98_RS04475 WP_265388111.1 967459..968001(+) (ssb) [Pseudomonas sp. KU26590]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGGACATGCGGCCAGGATCCCGAAGTCCGCTACATGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACAAGCGAGCAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAAGTCGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAAAAAGACGGCATCAAGCGTTACACGACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAGTTGCTCGGTGGCCGTCCTCAAGGCGAAGGCGCTCCTCAGGGCCAGGGTGGTGGCGGTTATCAGAACTCCCAAA
ACTCCGCGCCGCGCCCGCAGCAACAGGCACGCCCGCAGTCTGCTCCTCAGCCTCAGCCACAGCGCGAGTCGCGCCCCGCG
CCGCAACAAGCGCCGCAGCCAGCGCCTGATTTCGACAGCTTCGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.239

100

0.606
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.511
  ssb Neisseria meningitidis MC58

49.721

99.444

0.494
  ssb Neisseria gonorrhoeae MS11

49.721

99.444

0.494