Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OOT55_RS00930 Genome accession   NZ_CP110629
Coordinates   215128..215679 (+) Length   183 a.a.
NCBI ID   WP_322113822.1    Uniprot ID   -
Organism   Marinimicrobium sp. C6131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 210128..220679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT55_RS00920 (OOT55_00920) uvrA 210615..213482 (-) 2868 WP_265367297.1 excinuclease ABC subunit UvrA -
  OOT55_RS00925 (OOT55_00925) - 213676..215046 (+) 1371 WP_265367298.1 MFS transporter -
  OOT55_RS00930 (OOT55_00930) ssb 215128..215679 (+) 552 WP_322113822.1 single-stranded DNA-binding protein Machinery gene
  OOT55_RS00935 (OOT55_00935) - 215706..216572 (+) 867 WP_265367299.1 sugar nucleotide-binding protein -
  OOT55_RS00940 (OOT55_00940) fabB 216657..217874 (-) 1218 WP_265367300.1 beta-ketoacyl-ACP synthase I -
  OOT55_RS00945 (OOT55_00945) fabA 218009..218533 (-) 525 WP_265367301.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  OOT55_RS00950 (OOT55_00950) - 218634..219596 (-) 963 WP_265367302.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19494.13 Da        Isoelectric Point: 4.7790

>NTDB_id=755437 OOT55_RS00930 WP_322113822.1 215128..215679(+) (ssb) [Marinimicrobium sp. C6131]
MARGINKVILIGNLGADPETRYMPSGGAVTNVNLATSEQWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVANEMQMLDGRGGDNSNYGGGGGYGNQSGPSDDYSAPQGGGSYGGGAQNAPAQGGQQNA
PRGGGQPQQPAGGFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=755437 OOT55_RS00930 WP_322113822.1 215128..215679(+) (ssb) [Marinimicrobium sp. C6131]
ATGGCTCGGGGAATCAATAAAGTCATTCTGATCGGGAATCTGGGCGCCGATCCGGAAACCCGCTACATGCCTTCTGGTGG
GGCAGTGACCAACGTCAATCTGGCCACCAGTGAACAGTGGAAGGACAAGCAGACCGGCCAGCCTCAGGAGCGTACCGAGT
GGCACCGTGTGGTCTTTTTCAACCGCCTGGCCGAGATTGCGGGCGAGTATCTGAAAAAGGGCAGCAAGGTCTATGTCGAA
GGCTCCTTGCGTACCCGCAAGTGGCAGGGGCAGGATGGTCAGGACCGCTACACCACTGAAATCGTCGCCAACGAGATGCA
GATGCTTGACGGCCGTGGCGGCGATAACAGCAATTACGGCGGCGGTGGCGGTTATGGCAATCAGTCCGGTCCGTCGGACG
ATTACTCTGCGCCACAAGGTGGGGGCAGCTACGGTGGTGGCGCTCAGAACGCGCCCGCTCAGGGGGGGCAGCAGAACGCG
CCTCGTGGCGGCGGCCAGCCTCAGCAGCCGGCAGGCGGCTTTGACAGCTTTGATGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.08

100

0.563
  ssb Glaesserella parasuis strain SC1401

54.348

100

0.546
  ssb Neisseria meningitidis MC58

48.936

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.644

100

0.497