Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJP84_RS16120 Genome accession   NZ_CP124351
Coordinates   3272750..3273286 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain AVS0362     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3267750..3278286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP84_RS16100 (QJP84_16100) aphA 3268038..3268751 (+) 714 WP_001226933.1 acid phosphatase AphA -
  QJP84_RS16105 (QJP84_16105) yjbQ 3268862..3269278 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QJP84_RS16110 (QJP84_16110) yjbR 3269282..3269638 (+) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  QJP84_RS16115 (QJP84_16115) uvrA 3269673..3272495 (-) 2823 WP_000357755.1 excinuclease ABC subunit UvrA Machinery gene
  QJP84_RS16120 (QJP84_16120) ssb 3272750..3273286 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QJP84_RS16125 (QJP84_16125) yjcB 3273385..3273666 (-) 282 WP_001296643.1 YjcB family protein -
  QJP84_RS16130 (QJP84_16130) pdeC 3274095..3275681 (+) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  QJP84_RS16135 (QJP84_16135) soxS 3275684..3276007 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QJP84_RS16140 (QJP84_16140) soxR 3276093..3276557 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=754978 QJP84_RS16120 WP_000168305.1 3272750..3273286(+) (ssb) [Escherichia coli strain AVS0362]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=754978 QJP84_RS16120 WP_000168305.1 3272750..3273286(+) (ssb) [Escherichia coli strain AVS0362]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489