Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OMR53_RS06335 Genome accession   NZ_CP110384
Coordinates   1323710..1324258 (-) Length   182 a.a.
NCBI ID   WP_216013705.1    Uniprot ID   -
Organism   Tritonibacter mobilis strain A3R06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1318710..1329258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMR53_RS06325 (OMR53_06325) - 1319622..1320935 (+) 1314 WP_005638837.1 HlyC/CorC family transporter -
  OMR53_RS06330 (OMR53_06330) - 1321179..1323596 (+) 2418 WP_216013704.1 FAD-dependent oxidoreductase -
  OMR53_RS06335 (OMR53_06335) ssb 1323710..1324258 (-) 549 WP_216013705.1 single-stranded DNA-binding protein Machinery gene
  OMR53_RS06340 (OMR53_06340) - 1324528..1325103 (+) 576 WP_005617923.1 lytic transglycosylase domain-containing protein -
  OMR53_RS06345 (OMR53_06345) - 1325267..1325641 (+) 375 WP_009177250.1 hypothetical protein -
  OMR53_RS06350 (OMR53_06350) - 1325780..1326916 (+) 1137 WP_216013706.1 cytochrome c peroxidase -
  OMR53_RS06355 (OMR53_06355) - 1327045..1328460 (+) 1416 WP_065333944.1 sulfotransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18740.32 Da        Isoelectric Point: 4.9929

>NTDB_id=754830 OMR53_RS06335 WP_216013705.1 1323710..1324258(-) (ssb) [Tritonibacter mobilis strain A3R06]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQFLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGFGGGQGGGDYGGGDYGGGGSGGYGGGGSYGGGGGGG
NQGGGFGGGGPSQNIDDDEIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=754830 OMR53_RS06335 WP_216013705.1 1323710..1324258(-) (ssb) [Tritonibacter mobilis strain A3R06]
ATGGCCGGATCCCTGAACAAAGTAATGCTCATCGGCAACCTTGGCCGCGATCCGGAAGTGCGTAGCTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGGATCGCGACGTCGGAGACGTGGAAGGACCGTAACACCGGTGAGCGCCGTGAAAAAACCGAAT
GGCACTCTGTTGCGATCTTCAACGAAGGTCTGGTGCGTGTCGCAGAGCAATTTCTGCGCAAAGGGTCCAAGGTCTATATC
GAAGGCCAGCTGCAAACCCGCAAGTGGCAGGACCAGAGCGGTCAGGACCGGTATTCTACCGAAGTCGTGCTGCAAGGCTT
TGGCTCGACGCTCACCATGCTTGATGGTCGCGGCGAAGGTGGCGGCGGTGGCTTTGGCGGTGGTCAAGGCGGCGGCGATT
ACGGTGGCGGCGATTACGGCGGTGGTGGCAGTGGCGGCTACGGTGGTGGTGGCAGCTACGGCGGCGGCGGTGGCGGCGGC
AACCAAGGCGGTGGCTTTGGTGGCGGTGGCCCCTCGCAAAACATCGACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.936

100

0.505
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.505
  ssb Neisseria meningitidis MC58

40

98.901

0.396
  ssb Neisseria gonorrhoeae MS11

40

98.901

0.396