Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LFL98_RS21290 Genome accession   NZ_CP110365
Coordinates   4083461..4083979 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain HY2-62     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4078461..4088979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS21260 (LFL98_21265) yyaJ 4078965..4080320 (+) 1356 WP_029318525.1 MFS transporter -
  LFL98_RS21265 (LFL98_21270) maa 4080354..4080908 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  LFL98_RS21270 (LFL98_21275) yyaH 4080926..4081306 (-) 381 WP_029318524.1 VOC family protein -
  LFL98_RS21275 (LFL98_21280) ccpB 4081362..4082297 (-) 936 WP_029318523.1 transcriptional regulator CcpB -
  LFL98_RS21280 (LFL98_21285) xth 4082356..4083114 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  LFL98_RS21285 (LFL98_21290) rpsR 4083178..4083417 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  LFL98_RS21290 (LFL98_21295) ssbA 4083461..4083979 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  LFL98_RS21295 (LFL98_21300) rpsF 4084020..4084307 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  LFL98_RS21300 (LFL98_21305) ychF 4084418..4085518 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  LFL98_RS21305 (LFL98_21310) yyaE 4085645..4087648 (-) 2004 WP_277736847.1 molybdopterin-dependent oxidoreductase -
  LFL98_RS21310 (LFL98_21315) yyzM 4087699..4087905 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=754659 LFL98_RS21290 WP_003219228.1 4083461..4083979(-) (ssbA) [Bacillus subtilis strain HY2-62]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=754659 LFL98_RS21290 WP_003219228.1 4083461..4083979(-) (ssbA) [Bacillus subtilis strain HY2-62]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378