Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ONR73_RS20885 Genome accession   NZ_CP110364
Coordinates   4407846..4408433 (+) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain C4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4402846..4413433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONR73_RS20860 (ONR73_20860) - 4404360..4404881 (-) 522 WP_265061674.1 curlin -
  ONR73_RS20865 (ONR73_20865) - 4405069..4405908 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  ONR73_RS20870 (ONR73_20870) - 4405916..4406317 (-) 402 WP_019445195.1 curli assembly protein CsgF -
  ONR73_RS20875 (ONR73_20875) - 4406329..4406772 (-) 444 WP_108539376.1 curli production assembly/transport protein CsgE -
  ONR73_RS20880 (ONR73_20880) - 4406772..4407419 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  ONR73_RS20885 (ONR73_20885) ssb 4407846..4408433 (+) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  ONR73_RS20890 (ONR73_20890) - 4408570..4409313 (+) 744 WP_265062946.1 ABC transporter substrate-binding protein -
  ONR73_RS20895 (ONR73_20895) - 4409386..4409511 (-) 126 WP_019445191.1 hypothetical protein -
  ONR73_RS20900 (ONR73_20900) - 4409963..4410865 (+) 903 WP_265061675.1 cation diffusion facilitator family transporter -
  ONR73_RS20905 (ONR73_20905) yjbD 4411012..4411296 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  ONR73_RS20910 (ONR73_20910) cspA 4411892..4412104 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=754578 ONR73_RS20885 WP_005340181.1 4407846..4408433(+) (ssb) [Aeromonas veronii strain C4]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=754578 ONR73_RS20885 WP_005340181.1 4407846..4408433(+) (ssb) [Aeromonas veronii strain C4]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
TACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCGCCAGCTCCGCAGCAG
AATATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCACAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456