Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PALA35_RS25700 Genome accession   NZ_CP110346
Coordinates   5522398..5523735 (+) Length   445 a.a.
NCBI ID   WP_058166739.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA35     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5517398..5528735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA35_RS25675 (PALA35_05081) pgeF 5517541..5518269 (-) 729 WP_031756966.1 peptidoglycan editing factor PgeF -
  PALA35_RS25680 (PALA35_05082) rluD 5518266..5519228 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PALA35_RS25685 (PALA35_05083) - 5519374..5520399 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  PALA35_RS25690 (PALA35_05084) - 5520556..5520801 (+) 246 WP_003102591.1 PP0621 family protein -
  PALA35_RS25695 (PALA35_05085) pilS 5520791..5522383 (+) 1593 WP_269974496.1 two-component system sensor histidine kinase PilS Regulator
  PALA35_RS25700 (PALA35_05086) pilR 5522398..5523735 (+) 1338 WP_058166739.1 two-component system response regulator PilR Regulator
  PALA35_RS25705 (PALA35_05087) thiO 5523781..5524875 (-) 1095 WP_269974497.1 glycine oxidase ThiO -
  PALA35_RS25710 (PALA35_05088) - 5525010..5525519 (+) 510 WP_009316266.1 GspH/FimT family pseudopilin -
  PALA35_RS25715 (PALA35_05089) - 5525625..5526131 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PALA35_RS25720 (PALA35_05090) pilV 5526122..5526679 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PALA35_RS25725 (PALA35_05091) pilW 5526676..5527500 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA35_RS25730 (PALA35_05092) pilX 5527497..5528084 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49732.04 Da        Isoelectric Point: 6.0535

>NTDB_id=754243 PALA35_RS25700 WP_058166739.1 5522398..5523735(+) (pilR) [Pseudomonas aeruginosa strain PALA35]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIHALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=754243 PALA35_RS25700 WP_058166739.1 5522398..5523735(+) (pilR) [Pseudomonas aeruginosa strain PALA35]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGATACCGCGATCCACGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCTGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAGAATATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAAGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGTTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.551

100

0.996
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384