Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA35_RS25720 Genome accession   NZ_CP110346
Coordinates   5526122..5526679 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain PALA35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5521122..5531679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA35_RS25700 (PALA35_05086) pilR 5522398..5523735 (+) 1338 WP_058166739.1 two-component system response regulator PilR Regulator
  PALA35_RS25705 (PALA35_05087) thiO 5523781..5524875 (-) 1095 WP_269974497.1 glycine oxidase ThiO -
  PALA35_RS25710 (PALA35_05088) - 5525010..5525519 (+) 510 WP_009316266.1 GspH/FimT family pseudopilin -
  PALA35_RS25715 (PALA35_05089) - 5525625..5526131 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PALA35_RS25720 (PALA35_05090) pilV 5526122..5526679 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PALA35_RS25725 (PALA35_05091) pilW 5526676..5527500 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA35_RS25730 (PALA35_05092) pilX 5527497..5528084 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PALA35_RS25735 (PALA35_05093) pilY1 5528096..5531587 (+) 3492 WP_269974498.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=754244 PALA35_RS25720 WP_003094697.1 5526122..5526679(+) (pilV) [Pseudomonas aeruginosa strain PALA35]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=754244 PALA35_RS25720 WP_003094697.1 5526122..5526679(+) (pilV) [Pseudomonas aeruginosa strain PALA35]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978