Detailed information NTG0754128

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LJ360_RS05410
• Genome accession: NZ_CP110342
• Coordinates: 1199412..1200710 (-)
• Length: 432 a.a.
• NCBI ID: WP_413774418.1
• Uniprot ID: -
• Organism: Marinobacter sp. AN1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1194412..1205710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJ360_RS05385 (LJ360_05385)	-	1194454..1194948 (+)	495	WP_264995511.1	PilX N-terminal domain-containing pilus assembly protein	-
LJ360_RS05390 (LJ360_05390)	-	1194970..1195350 (+)	381	WP_264995512.1	hypothetical protein	-
LJ360_RS05395 (LJ360_05395)	-	1195347..1198244 (+)	2898	WP_264995513.1	PilC/PilY family type IV pilus protein	-
LJ360_RS05400 (LJ360_05400)	-	1198250..1198705 (+)	456	WP_264995515.1	type IV pilin protein	-
LJ360_RS05405 (LJ360_05405)	-	1198736..1199290 (-)	555	WP_264995516.1	GspH/FimT family pseudopilin	-
LJ360_RS05410 (LJ360_05410)	pilR	1199412..1200710 (-)	1299	WP_413774418.1	sigma-54-dependent transcriptional regulator	Regulator
LJ360_RS20005	pilR	1200647..1200802 (-)	156	WP_413774398.1	hypothetical protein	Regulator
LJ360_RS05415 (LJ360_05415)	-	1200825..1202462 (-)	1638	WP_264995997.1	sensor histidine kinase	-
LJ360_RS05420 (LJ360_05420)	-	1202596..1204260 (+)	1665	WP_264995517.1	NAD+ synthase	-
LJ360_RS05425 (LJ360_05425)	-	1204282..1205115 (-)	834	WP_091854982.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 432 a.a.
• Molecular weight: 48163.81 Da
• Isoelectric Point: 4.8452

>NTDB_id=754128 LJ360_RS05410 WP_413774418.1 1199412..1200710(-) (pilR) [Marinobacter sp. AN1]
MAPDLATARELLEAEPAHLCLTDMNLPDGNGIDLVAWIQEHRPETPVAVITAYGNMDTAIEALKAGAFDFVSKPVELPRL
RELVNSALRLSEPERQEIQQTDEPGLLLGNSREIQRLRSQTRKLARSQAPVFISGESGSGKELVARMIHMQGPRSDAPFV
AVNCGAIPSELMESEFFGHRKGSFTGANESKDGLFRSADGGTLFLDEVADLPLAMQVKLLRAIQEKAVRPVGESREVPVD
IRILSATHKNLPELVKDGSFRQDLFYRINVIELAVPALRERPDDIPLLSNHILERIAREYECPPARLSQGALGYLKDYAF
PGNVRELENILERAFTLCDSEVIDTDDLHIGTPPVDLPPSRQMRESQDSDNSQELPSLPDGDMDLERYLETIERQAIEKA
LEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1299 bp

>NTDB_id=754128 LJ360_RS05410 WP_413774418.1 1199412..1200710(-) (pilR) [Marinobacter sp. AN1]
ATCGCCCCGGACCTGGCCACAGCACGGGAGTTACTGGAAGCGGAACCGGCCCACCTGTGCCTGACCGACATGAACCTGCC
GGACGGCAACGGTATCGACCTGGTGGCCTGGATACAGGAGCACCGGCCAGAAACCCCGGTAGCTGTCATCACCGCCTACG
GCAACATGGATACCGCCATTGAGGCCCTCAAGGCCGGAGCCTTTGACTTCGTGAGCAAGCCGGTGGAACTGCCCCGATTA
CGGGAACTGGTGAACAGTGCCCTGAGACTGTCAGAGCCGGAACGCCAGGAGATCCAGCAGACCGATGAACCGGGCCTGCT
GCTGGGCAACTCCCGTGAAATCCAGCGTCTGCGCAGCCAGACCCGCAAGCTGGCCCGCAGCCAGGCGCCAGTATTCATCA
GTGGCGAATCCGGCAGTGGTAAAGAGTTGGTCGCCCGTATGATTCACATGCAGGGCCCCCGCAGCGACGCGCCGTTTGTG
GCCGTCAACTGCGGCGCCATTCCGTCTGAGCTGATGGAAAGCGAGTTCTTCGGTCACCGCAAGGGCAGCTTCACCGGCGC
CAACGAGAGCAAGGACGGGCTGTTTCGCAGCGCTGATGGCGGCACACTCTTTCTGGACGAAGTGGCGGACCTGCCCCTGG
CCATGCAGGTGAAACTGCTCCGGGCCATTCAGGAAAAAGCCGTCCGACCGGTGGGTGAATCCCGGGAAGTACCCGTGGAC
ATCCGCATCCTCAGTGCCACCCACAAGAACCTGCCAGAACTGGTCAAGGACGGCAGCTTCCGCCAGGACCTGTTCTATCG
CATCAACGTCATTGAACTGGCCGTACCCGCACTGCGGGAGCGCCCGGACGATATACCGCTCCTGTCCAACCATATCCTCG
AGCGCATCGCGCGGGAGTATGAATGTCCGCCGGCACGCCTCAGCCAGGGCGCCCTGGGCTACCTGAAGGACTACGCATTC
CCTGGCAACGTCCGGGAGCTGGAGAACATCCTGGAGCGCGCATTTACCTTGTGTGATTCCGAAGTAATCGATACCGATGA
CCTACACATTGGAACACCCCCGGTAGACCTGCCCCCGAGCCGACAGATGCGAGAGAGCCAGGACTCTGACAACAGCCAGG
AGCTACCATCTCTGCCAGATGGCGATATGGACCTTGAGCGGTACCTGGAAACCATTGAGCGCCAGGCAATTGAAAAGGCA
CTTGAGGCGACGCGGTGGAACAAGACGGCAGCCGCTAAACGGCTTGGGATCAGTTTTCGGGCGTTGCGGTATCGGTTGAA
GAAATTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (2-84)

• Sigma-54 interaction domain (Sigma54_activat) (107-273)

• Bacterial regulatory protein, Fis family (HTH_8) (389-429)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.426	100	0.634
pilR	Acinetobacter baumannii strain A118	52.164	100	0.53
luxO	Vibrio cholerae strain A1552	37.674	99.537	0.375