Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LJ360_RS20005 Genome accession   NZ_CP110342
Coordinates   1200647..1200802 (-) Length   51 a.a.
NCBI ID   WP_413774398.1    Uniprot ID   -
Organism   Marinobacter sp. AN1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195647..1205802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS05400 (LJ360_05400) - 1198250..1198705 (+) 456 WP_264995515.1 type IV pilin protein -
  LJ360_RS05405 (LJ360_05405) - 1198736..1199290 (-) 555 WP_264995516.1 GspH/FimT family pseudopilin -
  LJ360_RS05410 (LJ360_05410) pilR 1199412..1200710 (-) 1299 WP_413774418.1 sigma-54-dependent transcriptional regulator Regulator
  LJ360_RS20005 pilR 1200647..1200802 (-) 156 WP_413774398.1 hypothetical protein Regulator
  LJ360_RS05415 (LJ360_05415) - 1200825..1202462 (-) 1638 WP_264995997.1 sensor histidine kinase -
  LJ360_RS05420 (LJ360_05420) - 1202596..1204260 (+) 1665 WP_264995517.1 NAD+ synthase -
  LJ360_RS05425 (LJ360_05425) - 1204282..1205115 (-) 834 WP_091854982.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 51 a.a.        Molecular weight: 5934.81 Da        Isoelectric Point: 8.0525

>NTDB_id=754150 LJ360_RS20005 WP_413774398.1 1200647..1200802(-) (pilR) [Marinobacter sp. AN1]
MTTHTALIVDDEPDIRELLEITLVRMGIATRSPRTWPQHGSYWKRNRPTCA

Nucleotide


Download         Length: 156 bp        

>NTDB_id=754150 LJ360_RS20005 WP_413774398.1 1200647..1200802(-) (pilR) [Marinobacter sp. AN1]
ATGACTACCCATACCGCACTGATTGTGGATGACGAACCGGATATCCGCGAACTGCTGGAGATTACCCTGGTGCGCATGGG
CATCGCCACCCGATCGCCCCGGACCTGGCCACAGCACGGGAGTTACTGGAAGCGGAACCGGCCCACCTGTGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

73.529

66.667

0.49