Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJ360_RS04535 Genome accession   NZ_CP110342
Coordinates   1011671..1012210 (+) Length   179 a.a.
NCBI ID   WP_091851130.1    Uniprot ID   A0A1I0DU60
Organism   Marinobacter sp. AN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1006671..1017210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS04520 (LJ360_04520) - 1008550..1009443 (-) 894 WP_091851119.1 MotB family protein -
  LJ360_RS04525 (LJ360_04525) pomA 1009448..1010215 (-) 768 WP_091851123.1 flagellar motor protein PomA -
  LJ360_RS04530 (LJ360_04530) - 1010413..1011687 (+) 1275 WP_091851126.1 MFS transporter -
  LJ360_RS04535 (LJ360_04535) ssb 1011671..1012210 (+) 540 WP_091851130.1 single-stranded DNA-binding protein Machinery gene
  LJ360_RS04540 (LJ360_04540) ntrC 1012345..1013772 (-) 1428 WP_264995407.1 nitrogen regulation protein NR(I) -
  LJ360_RS04545 (LJ360_04545) glnL 1013772..1014854 (-) 1083 WP_091851136.1 nitrogen regulation protein NR(II) -
  LJ360_RS04550 (LJ360_04550) - 1015306..1015830 (-) 525 WP_091851139.1 DUF4124 domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19621.67 Da        Isoelectric Point: 4.9363

>NTDB_id=754125 LJ360_RS04535 WP_091851130.1 1011671..1012210(+) (ssb) [Marinobacter sp. AN1]
MARGVNKVILIGNLGQDPETRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQGQDGQDRYTTEVVVDINGQMQMLDSRGAGGGMDQGAPQGRPQPQPQQNQQPPQGNYGQQSGQQGGGYNQPA
GGQGNMPEPVDDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=754125 LJ360_RS04535 WP_091851130.1 1011671..1012210(+) (ssb) [Marinobacter sp. AN1]
ATGGCACGAGGTGTTAACAAGGTCATTCTGATCGGCAACCTGGGGCAGGACCCGGAGACCCGCTATACGCCGAACGGCAA
TGCGGTCGTAAACCTGAACCTGGCTACCGATGAAAGCTACAAGGACCGCCAGACCGGTCAGATGGTGCCCAAGACTGAAT
GGCACCGCATCGTCATGTTCGGCAAGATCGCCGAAGTGGCTGGTCAGTACCTGCGCAAGGGTTCCAAGGTTTACATCGAA
GGCAAACTGCAGACCCGCAAATGGCAGGGTCAGGACGGCCAGGACCGCTACACCACCGAAGTGGTAGTGGACATTAATGG
CCAGATGCAGATGCTGGACAGCCGCGGTGCCGGTGGTGGCATGGACCAGGGCGCCCCCCAGGGCCGTCCCCAGCCGCAAC
CACAGCAAAACCAGCAACCGCCGCAGGGCAATTACGGTCAGCAGAGTGGCCAGCAAGGCGGTGGCTATAACCAGCCAGCC
GGAGGCCAGGGTAATATGCCCGAGCCGGTGGACGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I0DU60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.447

100

0.603
  ssb Glaesserella parasuis strain SC1401

54.144

100

0.547
  ssb Neisseria meningitidis MC58

45.109

100

0.464
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.453