Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJ361_RS05915 Genome accession   NZ_CP110339
Coordinates   1208998..1209516 (+) Length   172 a.a.
NCBI ID   WP_029924876.1    Uniprot ID   A0A011VB38
Organism   Brucella sp. JSBI001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1203998..1214516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ361_RS05910 (LJ361_05910) uvrA 1205081..1208005 (-) 2925 WP_010660138.1 excinuclease ABC subunit UvrA -
  LJ361_RS05915 (LJ361_05915) ssb 1208998..1209516 (+) 519 WP_029924876.1 single-stranded DNA-binding protein Machinery gene
  LJ361_RS05920 (LJ361_05920) arsC 1209633..1210046 (-) 414 WP_105529052.1 arsenate reductase (glutaredoxin) -
  LJ361_RS05925 (LJ361_05925) phnF 1210101..1210874 (-) 774 WP_162998213.1 phosphonate metabolism transcriptional regulator PhnF -
  LJ361_RS05930 (LJ361_05930) phnG 1211200..1211616 (+) 417 WP_413775052.1 phosphonate C-P lyase system protein PhnG -
  LJ361_RS05935 (LJ361_05935) phnH 1211616..1212245 (+) 630 WP_105529054.1 phosphonate C-P lyase system protein PhnH -
  LJ361_RS05940 (LJ361_05940) - 1212248..1213357 (+) 1110 WP_010660131.1 carbon-phosphorus lyase complex subunit PhnI -
  LJ361_RS05945 (LJ361_05945) - 1213354..1214247 (+) 894 WP_264812986.1 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18607.33 Da        Isoelectric Point: 5.3476

>NTDB_id=754112 LJ361_RS05915 WP_029924876.1 1208998..1209516(+) (ssb) [Brucella sp. JSBI001]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQSGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGSSG
GFSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=754112 LJ361_RS05915 WP_029924876.1 1208998..1209516(+) (ssb) [Brucella sp. JSBI001]
ATGGCTGGTAGCGTCAATAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCGGAAATTCGTCGTCTGAATTCCGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCGGAAAGCTGGCGCGATCGCCAGAGCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTTGTCATCTTCAATGAAAACCTCGCCAAGGTTGCGGAACAATATCTGAAGAAGGGCGCCAAGGTTTACATC
GAAGGCGCGCTCCAGACCCGCAAATGGCAGGATCAGAACGGCAATGACCGTTATTCGACGGAAGTCGTGCTGCAGAAGTT
CCGTGGTGAGCTGCAGATGCTCGATAGCCGTGGTGAAGGCGGCGGTGAAGGCCGTTCGTTCGGCGGCGGTGGCGGCAACC
GTAACCAGATGTCTGATTATTCCGGTGGCGGCGGTGATTTCGGCTCGTCTGGCCCATCCAATCAGGGTGGCAGCAGCGGT
GGCTTCTCGCGCGATCTGGACGACGAAATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A011VB38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.517
  ssb Vibrio cholerae strain A1552

49.714

100

0.506
  ssb Neisseria meningitidis MC58

38.674

100

0.407
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.395