Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OLL83_RS18895 Genome accession   NZ_CP110338
Coordinates   4208156..4208878 (-) Length   240 a.a.
NCBI ID   WP_264920354.1    Uniprot ID   -
Organism   Shewanella algae strain B2215466     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4203156..4213878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL83_RS18885 (OLL83_003777) - 4205932..4206846 (-) 915 WP_190533455.1 LysR family transcriptional regulator -
  OLL83_RS18890 (OLL83_003778) - 4206972..4208081 (+) 1110 WP_208123818.1 HisA/HisF-related TIM barrel protein -
  OLL83_RS18895 (OLL83_003779) ssb 4208156..4208878 (-) 723 WP_264920354.1 single-stranded DNA-binding protein Machinery gene
  OLL83_RS18900 (OLL83_003780) - 4208913..4210280 (-) 1368 WP_264920355.1 MFS transporter -
  OLL83_RS18905 (OLL83_003781) uvrA 4210502..4213324 (+) 2823 WP_028780625.1 excinuclease ABC subunit UvrA -
  OLL83_RS18910 (OLL83_003782) - 4213332..4213682 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 26414.76 Da        Isoelectric Point: 5.9130

>NTDB_id=754103 OLL83_RS18895 WP_264920354.1 4208156..4208878(-) (ssb) [Shewanella algae strain B2215466]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQNQGSYGGGQAQSQSQSQYNAPQ
QSGGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 723 bp        

>NTDB_id=754103 OLL83_RS18895 WP_264920354.1 4208156..4208878(-) (ssb) [Shewanella algae strain B2215466]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGTTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGGGGTATGAACCAAG
GTGGTATGAACCAAAACCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATCTCAATACAATGCGCCACAG
CAGTCCGGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAACAGTACAACGCGCCGCAGCAGCAAAG
CTATGGTCAGCAGCAGAACTCAGGTTATGCGCCTAAGCCACAGCAGCCAGCGCCGCAACAACAGGCGGCTCCGCAACAGC
GGCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.893

100

0.533
  ssb Glaesserella parasuis strain SC1401

45.992

98.75

0.454
  ssb Neisseria gonorrhoeae MS11

42.128

97.917

0.413
  ssb Neisseria meningitidis MC58

41.277

97.917

0.404