Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OM951_RS05305 Genome accession   NZ_CP110315
Coordinates   1195836..1196363 (+) Length   175 a.a.
NCBI ID   WP_099770622.1    Uniprot ID   A0A3T0G0H7
Organism   Xanthomonas phaseoli pv. phaseoli strain UnB187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1190836..1201363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM951_RS05290 (OM951_05290) murD 1191840..1193246 (+) 1407 WP_039573857.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  OM951_RS05295 (OM951_05295) - 1193559..1194359 (+) 801 WP_039573859.1 dienelactone hydrolase family protein -
  OM951_RS05300 (OM951_05300) - 1194562..1195560 (-) 999 WP_264686363.1 polyprenyl synthetase family protein -
  OM951_RS05305 (OM951_05305) ssb 1195836..1196363 (+) 528 WP_099770622.1 single-stranded DNA-binding protein Machinery gene
  OM951_RS05310 (OM951_05310) - 1196648..1198195 (-) 1548 WP_180301663.1 sensor domain-containing diguanylate cyclase -
  OM951_RS05315 (OM951_05315) - 1198419..1199425 (+) 1007 Protein_1032 NAD(P)-dependent alcohol dehydrogenase -
  OM951_RS05320 (OM951_05320) paoA 1199825..1200484 (+) 660 WP_257384884.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18800.64 Da        Isoelectric Point: 5.3095

>NTDB_id=754072 OM951_RS05305 WP_099770622.1 1195836..1196363(+) (ssb) [Xanthomonas phaseoli pv. phaseoli strain UnB187]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSASRQQGGGGGQGGGYGGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=754072 OM951_RS05305 WP_099770622.1 1195836..1196363(+) (ssb) [Xanthomonas phaseoli pv. phaseoli strain UnB187]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGATACCAAATACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGTACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATTGCCGGCGAATACCTGCGCAAGGGGTCGCAGGTCTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGGGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCATCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGCGGTGGATACGGTGGCGGTGGGCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAGCAACAG
TCGGCACCGCCGATGGACGATTTCGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0G0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.33

100

0.491
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.48
  ssb Neisseria meningitidis MC58

42.391

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.391

100

0.446