Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OCX48_RS08555 Genome accession   NZ_AP024736
Coordinates   1746462..1747064 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain 59709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741462..1752064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX48_RS08535 yajC 1742958..1743218 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  OCX48_RS08540 tgt 1743237..1744376 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  OCX48_RS08545 queA 1744399..1745424 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  OCX48_RS08550 ruvB 1745426..1746430 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OCX48_RS08555 ruvA 1746462..1747064 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  OCX48_RS08560 - 1747078..1747533 (-) 456 WP_000368902.1 ACT domain-containing protein -
  OCX48_RS08565 obgE 1747546..1748838 (-) 1293 WP_000496100.1 GTPase ObgE -
  OCX48_RS08570 rpmA 1749323..1749607 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  OCX48_RS08575 - 1749619..1749939 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  OCX48_RS08580 rplU 1749945..1750253 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  OCX48_RS08585 mreD 1750741..1751271 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=75389 OCX48_RS08555 WP_000271550.1 1746462..1747064(-) (ruvA) [Staphylococcus aureus strain 59709]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=75389 OCX48_RS08555 WP_000271550.1 1746462..1747064(-) (ruvA) [Staphylococcus aureus strain 59709]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43