Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   UKS_RS08085 Genome accession   NZ_AP021887
Coordinates   1600574..1602532 (-) Length   652 a.a.
NCBI ID   WP_156012618.1    Uniprot ID   A0A6H3S742
Organism   Streptococcus sp. 116-D4     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595574..1607532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS08065 (UKS_15580) rfbB 1596558..1597607 (-) 1050 WP_049528903.1 dTDP-glucose 4,6-dehydratase -
  UKS_RS08070 (UKS_15590) - 1597620..1598213 (-) 594 WP_156012612.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  UKS_RS08075 (UKS_15600) rfbA 1598214..1599083 (-) 870 WP_156012614.1 glucose-1-phosphate thymidylyltransferase RfbA -
  UKS_RS08080 (UKS_15610) glf 1599140..1600240 (-) 1101 WP_156012616.1 UDP-galactopyranose mutase -
  UKS_RS08085 (UKS_15620) amiA3 1600574..1602532 (-) 1959 WP_156012618.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS08090 (UKS_15630) amiA3 1602736..1604703 (-) 1968 WP_049497154.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS08095 (UKS_15640) - 1605087..1606697 (-) 1611 WP_156012620.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72789.97 Da        Isoelectric Point: 4.8859

>NTDB_id=75375 UKS_RS08085 WP_156012618.1 1600574..1602532(-) (amiA3) [Streptococcus sp. 116-D4]
MNTKKRVLSAGLTFAATLLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSRDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGVDSDFSKVGVKA
IDDQTIEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHGKV
SIEHVKLAYFDGLDQELTIRNFENGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKVYNHTSKMTDE
QKQSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSGVNLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNSVAGMNSVKQTIESVLGDDNIVIDVQQLSTDDFNNVG
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAKEDKDKIASLGLDTYTKMLKDADTENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQEDTVTTKQFEEAKTKWEQESKKAI
EKAQKEVEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=75375 UKS_RS08085 WP_156012618.1 1600574..1602532(-) (amiA3) [Streptococcus sp. 116-D4]
ATGAATACAAAAAAGCGTGTCCTTAGTGCAGGTCTGACTTTTGCGGCTACTTTGCTATTAGCTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTATTTATTAGACTACTACGCTGACA
ATACAGCTATTATTACTAACCTAGTTGACGGTTTGCTCGAAAATGACAATCACGGAAATCTAGTTCCGTCTCTGGCAGAA
GATTGGTCTGTTTCAAGAGACGGTCTGACCTATACCTACAAATTGAGAAAAGATGCCAAATGGTTCACAGCTGATGGTGA
AGAGTACGCTCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAGTACGCAGTGGATAATAAATCACAGGCCATTGACC
TAATTCAAAACTCGATCAAGGGCTTGAATGATTATATTACAGGAGTAGATTCTGACTTTTCTAAGGTTGGAGTGAAGGCG
ATTGACGACCAGACTATTGAGTATACTTTGGCACGTCCAGAACCTTACTGGAACTCAAAAACAACGAATAGTATTCTTTT
CCCAGTAAACGAGGAGTTTTTAAATTCAAAAGGAAAAGATTTCGGTACCTTATCTCCAGACAGCATTCTCTATAGCGGAC
CTTATTTGTTAAAAGATTTCACATCGAAATCATCGATCGAGTATGTGAAGAATCCGCATTACTATGATCATGGTAAAGTA
TCGATTGAACATGTGAAATTGGCTTATTTTGATGGCTTAGACCAAGAATTGACTATCCGTAACTTTGAAAATGGAGCTTA
TTCTATTGCGGGGGTTTATCCAAATAGTTCTAACTTTGCCAAAACCAAGGAGAAATACAAGGATAATATCGTCTATAGTT
TGCAGGATAAGACATCTTGGTACTTCAATTTCAATGTCAATCGTAAGGTCTACAACCATACATCTAAAATGACAGATGAG
CAGAAGCAGTCAACTGAGACAGCTGTTTTGAACAAGAACTTCCGCCAAGCGGTGAACTTCGCCTTGGATCGTACAGCCTA
TTCTGCCCAGTCAAATGGAGAAGAAGCGGCTAGTAAGACCCTTCGTAATACCCTAGTGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACCTTTGGAGAAGTAGTCGCTTCTAAATTAGTCAACTATGGCACAGAATGGTCAGGAGTAAACCTAGCTGAT
GCACAGGATGCCTATTTCAACAAGGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCAATTCACTTGGATGTGGCAGTTGATCAGACAAGTAAAAATTCTGTGGCAGGCATGAACTCAGTTAAACAGA
CCATTGAGTCAGTTTTAGGTGATGATAATATTGTCATTGATGTTCAGCAATTGTCAACAGATGATTTTAATAATGTAGGC
TTTTTGGCGCCGACACCAGCTGATCGAGACTACGATTTAAACTTTGATGGTTGGGTGGGTGACTACCAAGATCCATCAAC
TTATCTCAATCCTTTCAATGCAGAGGATGGATTCTACCTTAAAATCTTTGGTTTAGATGCTAAGGAAGATAAAGATAAAA
TTGCTAGCTTGGGGCTGGATACCTACACTAAAATGCTTAAAGATGCAGATACTGAAAATAAAGATGTAGCGAAGCGTTAT
GAAAAGTATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATCATGTCAGCTATGTCAAGTGGTGGAACAGCATC
TGTAACTAAAGTAACGCCATTTACAAGAGGGTATTCACTGGTCGGCATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTACAAGAAGATACTGTCACGACCAAACAGTTTGAGGAAGCGAAAACTAAATGGGAGCAAGAAAGCAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGTAGAAAAGCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H3S742

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.685

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

50.228

100

0.506
  amiA Streptococcus salivarius strain HSISS4

50.152

100

0.505

Multiple sequence alignment