Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   UKS_RS08055 Genome accession   NZ_AP021887
Coordinates   1593191..1595170 (-) Length   659 a.a.
NCBI ID   WP_156012608.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588191..1600170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS08035 (UKS_15520) gpsB 1589265..1589594 (-) 330 WP_000146534.1 cell division regulator GpsB -
  UKS_RS08040 (UKS_15530) - 1589667..1590194 (-) 528 WP_156012602.1 SLOG family protein -
  UKS_RS08045 (UKS_15540) recU 1590261..1590857 (+) 597 WP_156012604.1 Holliday junction resolvase RecU -
  UKS_RS08050 (UKS_15550) pbp1a 1590854..1593049 (+) 2196 WP_156012606.1 penicillin-binding protein PBP1A -
  UKS_RS08055 (UKS_15560) amiA3 1593191..1595170 (-) 1980 WP_156012608.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS08060 (UKS_15570) rfbD 1595479..1596342 (-) 864 WP_156012610.1 dTDP-4-dehydrorhamnose reductase -
  UKS_RS08065 (UKS_15580) rfbB 1596558..1597607 (-) 1050 WP_049528903.1 dTDP-glucose 4,6-dehydratase -
  UKS_RS08070 (UKS_15590) - 1597620..1598213 (-) 594 WP_156012612.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  UKS_RS08075 (UKS_15600) rfbA 1598214..1599083 (-) 870 WP_156012614.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73043.56 Da        Isoelectric Point: 4.7593

>NTDB_id=75374 UKS_RS08055 WP_156012608.1 1593191..1595170(-) (amiA3) [Streptococcus sp. 116-D4]
MKTRKVLALAGVTLLAAGVLAACSGGSGAKGEQTFAFTYETDPDNLNYLTTGKAATADITSNVIDGLLESDRFGNLVPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSEGLYLVQDSIKGLDAYAKGEIKDFSQVGI
KALDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSILYNGPYLLKSIVTKSTVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLSAARLYPTSASFAELEKEMKDNIVYTQQDSTTYVVGTNIDRQSYKYTSKT
SEEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNIFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVIIDIQQLQKDEVL
NVTLFAQTAAGEDWDISDNVGWGPDFSDPSTYLDIIKPSVGENTRTYLGFDSGKDNEAAKKVGLNDYDKMVNEAGEETTD
VTKRYNKYAEAQAWLTDSALVIPTTSRTGRPILSKMVPFTLPFSFSGNKGTSDPLRYKYLELQDKAVTADEYQKAQDKWM
KEKEESNKKAQEELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=75374 UKS_RS08055 WP_156012608.1 1593191..1595170(-) (amiA3) [Streptococcus sp. 116-D4]
ATGAAAACAAGGAAAGTATTGGCTCTTGCGGGAGTAACTTTATTAGCAGCTGGTGTCTTAGCGGCTTGTTCTGGAGGATC
AGGCGCTAAAGGTGAACAGACCTTTGCCTTTACCTACGAGACAGACCCAGATAATCTCAACTACTTAACGACTGGTAAGG
CAGCGACTGCTGACATTACTAGTAATGTGATTGATGGATTATTGGAGAGTGATCGCTTTGGGAATTTGGTTCCCTCAATG
GCAGAGGACTGGTCGGTTTCTAAGGATGGCTTGACTTATACTTATAAGATTCGTCAGGATGCCAAGTGGTACACATCAGA
AGGAGAAGAGTATGCTCCTGTCAAGGCTCAAGACTTTGTAACAGGTCTTAAATATGCAACAGACAAGAAATCAGAAGGCC
TATACTTGGTACAGGATTCAATTAAAGGTTTGGACGCCTACGCTAAAGGGGAAATTAAAGATTTCTCTCAAGTCGGAATT
AAAGCCCTTGACGATCAAACGGTCCAATACACTTTAAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACTATGGGTGT
TTTAGCGCCAGTCAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCCAAAGCAACAGATCCAAGCAGTATCTTAT
ATAATGGTCCTTATTTATTGAAATCCATTGTAACCAAATCTACTGTTGAATTTGCGAAGAATCCTAATTACTGGGATAAA
GACAATGTCCATATTGACAAAGTTAAATTGTCATTCTGGGATGGTCAAGATACTAGTAAACCTGCAGAAAACTTTAAAGA
CGGTAGCCTTTCAGCAGCTCGTCTCTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAAAAAGAGATGAAGGACAATATTG
TCTATACGCAACAGGACTCTACGACTTATGTAGTAGGAACAAACATCGACCGTCAGTCCTATAAATATACTTCTAAGACT
AGTGAAGAACAAAAGACTTCAACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGATTTGACCG
TACAGCCTATGCTTCTCAGTTGAATGGACAAACAGGAGCAAGTAAAATCTTACGTAATATCTTTGTTCCACCAACATTTG
TACAAGCAGATGGAAAAAACTTTGGGGACATGGTCAAAGAAAAATTGGTGACTTATGGGGATGAATGGAAGGATGTGAAC
CTTGCTGATGCCCAAGATGGTCTCTATAACCCAGAGAAAGCCAAGGCAGAATTTGCTAAAGCTAAATCAGCTCTACAAGC
TGAGGGAGTGCAATTCCCAATTCACCTAGACATGCCTGTTGACCAAACAGCAACTACAAAAGTTCAACGTGTCCAATCTA
TGAAACAATCCTTGGAAGCGACTTTAGGAACTGATAATGTCATTATTGATATTCAACAATTGCAAAAAGATGAAGTGCTT
AATGTTACTTTATTTGCACAAACTGCTGCTGGTGAGGATTGGGATATTTCTGATAACGTTGGATGGGGACCAGACTTCTC
AGATCCATCAACTTATCTTGATATCATCAAGCCTTCTGTAGGGGAAAATACGAGAACTTACCTAGGATTTGATTCAGGAA
AAGACAATGAGGCGGCTAAGAAGGTTGGTCTCAATGATTATGATAAAATGGTCAATGAAGCAGGGGAAGAAACTACAGAT
GTGACGAAACGGTATAACAAGTATGCCGAAGCTCAAGCATGGTTGACAGATAGTGCCCTAGTCATTCCAACGACATCTCG
TACAGGTCGTCCAATCTTGTCTAAGATGGTACCATTTACTTTACCTTTCTCTTTCTCAGGGAACAAGGGGACAAGCGATC
CGCTCCGATACAAATATCTTGAACTTCAAGATAAGGCAGTCACAGCAGATGAATATCAAAAAGCGCAAGATAAATGGATG
AAAGAAAAAGAAGAATCCAATAAAAAAGCACAAGAAGAACTCGCAAATCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.182

100

0.583
  amiA Streptococcus salivarius strain HSISS4

58.03

100

0.581
  amiA3 Streptococcus thermophilus LMG 18311

57.727

100

0.578

Multiple sequence alignment