Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   OM992_RS16165 Genome accession   NZ_CP110268
Coordinates   3127953..3128939 (-) Length   328 a.a.
NCBI ID   WP_316936463.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3122953..3133939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS16130 (OM992_16130) - 3123208..3123684 (+) 477 WP_016938121.1 Na+/H+ antiporter subunit E -
  OM992_RS16135 (OM992_16135) - 3123684..3123968 (+) 285 WP_016938120.1 Na(+)/H(+) antiporter subunit F1 -
  OM992_RS16140 (OM992_16140) mnhG 3123952..3124326 (+) 375 WP_016938119.1 monovalent cation/H(+) antiporter subunit G -
  OM992_RS16145 (OM992_16145) - 3124366..3124749 (-) 384 WP_016938118.1 hotdog fold thioesterase -
  OM992_RS16150 (OM992_16150) comA 3124771..3125415 (-) 645 WP_049627264.1 response regulator transcription factor Regulator
  OM992_RS16155 (OM992_16155) comP 3125497..3127800 (-) 2304 WP_188154513.1 histidine kinase Regulator
  OM992_RS16160 (OM992_16160) comX 3127820..3127990 (-) 171 WP_003152048.1 competence pheromone ComX Regulator
  OM992_RS16165 (OM992_16165) comQ 3127953..3128939 (-) 987 WP_316936463.1 class 1 isoprenoid biosynthesis enzyme Regulator
  OM992_RS16170 (OM992_16170) degQ 3129070..3129210 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  OM992_RS16175 (OM992_16175) - 3129676..3130017 (+) 342 WP_049627267.1 hypothetical protein -
  OM992_RS16180 (OM992_16180) - 3130022..3131245 (-) 1224 WP_264819056.1 EAL and HDOD domain-containing protein -
  OM992_RS16185 (OM992_16185) - 3131375..3132841 (-) 1467 WP_095241408.1 nicotinate phosphoribosyltransferase -
  OM992_RS16190 (OM992_16190) - 3132859..3133410 (-) 552 WP_264819057.1 cysteine hydrolase family protein -
  OM992_RS16195 (OM992_16195) - 3133499..3133897 (-) 399 WP_016938110.1 YueI family protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 37810.37 Da        Isoelectric Point: 5.2933

>NTDB_id=753689 OM992_RS16165 WP_316936463.1 3127953..3128939(-) (comQ) [Bacillus siamensis strain YB-1631]
MKTIIEQMCLDADQIKNRMKSIIEQNIFNEHLLQLLLRFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLT
SDIIDDLEDEDNRDAPWMKIDRSLALSAAFSLYTAGLQSIKSISTNPLVIKYVLKYIQDAMQGQHDDLINRPETEDECLE
VIKLKCGSLFALANVTGTLLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQEL
LCIFSDQKLYSQLRLNKKEFIQKLYNSGASQYVSVLYQLYMHKCETEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEF
NKLFFELS

Nucleotide


Download         Length: 987 bp        

>NTDB_id=753689 OM992_RS16165 WP_316936463.1 3127953..3128939(-) (comQ) [Bacillus siamensis strain YB-1631]
GTGAAGACAATTATTGAGCAAATGTGTTTAGATGCCGACCAAATCAAGAATAGAATGAAGAGTATAATAGAGCAGAACAT
ATTTAATGAACATCTACTACAGCTTCTTCTTCGTTTTATTGAACCAAAAAAAAATTTTTCTCTAGCTGAATCAGCTGTTT
TGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTGGGTGCCGCTATTGAAATTCTTACGCTTACT
TCCGATATAATTGATGATCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATGAAGATAGATCGTTCACTAGCATTAAG
TGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAAATCGATTAGTACGAATCCTTTAGTGATTAAGTATGTAT
TAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTAATCAATAGACCAGAGACAGAAGATGAATGTTTAGAG
GTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACGCTTTTAGCAACTGGAGAATTCAATAA
GTCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGTGATTATCATGCTATTTTTAAGGATAATA
CTAGTGATATTCTGAAAGATAAACATACATTGATCAATTTATATCTTAAGCGCTTGTTTAATAAGTCTTCTCAAGAATTG
CTTTGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAAGAGTTTATTCAAAAGCTGTATAATTC
TGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGCATAAGTGTGAAACTGAAGTTGAAAATTTAAATTTAG
ATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATAAGAAGGATGATGAAGATGCAGAATTT
AATAAATTATTTTTTGAATTATCCTGA

Domains


Predicted by InterproScan.

(59-233)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

61.246

88.11

0.54