Detailed information NTG0753636

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: OM992_RS01980
• Genome accession: NZ_CP110268
• Coordinates: 411366..412514 (+)
• Length: 382 a.a.
• NCBI ID: WP_049627885.1
• Uniprot ID: -
• Organism: Bacillus siamensis strain YB-1631
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 406366..417514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OM992_RS01960 (OM992_01960)	-	406762..407445 (-)	684	WP_045926253.1	ABC transporter ATP-binding protein	-
OM992_RS01965 (OM992_01965)	-	407460..408896 (-)	1437	WP_264819625.1	ABC transporter permease	-
OM992_RS01970 (OM992_01970)	-	409109..409792 (+)	684	WP_264819626.1	response regulator transcription factor	-
OM992_RS01975 (OM992_01975)	-	409779..411212 (+)	1434	WP_264819627.1	HAMP domain-containing sensor histidine kinase	-
OM992_RS01980 (OM992_01980)	rapC	411366..412514 (+)	1149	WP_049627885.1	tetratricopeptide repeat protein	Regulator
OM992_RS01985 (OM992_01985)	phrC	412498..412617 (+)	120	WP_016937261.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
OM992_RS01990 (OM992_01990)	-	412759..412857 (-)	99	WP_016937260.1	YjcZ family sporulation protein	-
OM992_RS01995 (OM992_01995)	-	412954..414318 (-)	1365	WP_016937259.1	aspartate kinase	-
OM992_RS02000 (OM992_02000)	ceuB	414733..415686 (+)	954	WP_045926248.1	ABC transporter permease	Machinery gene
OM992_RS02005 (OM992_02005)	-	415676..416623 (+)	948	WP_264819630.1	iron chelate uptake ABC transporter family permease subunit	-
OM992_RS02010 (OM992_02010)	-	416617..417375 (+)	759	WP_016937256.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45534.69 Da
• Isoelectric Point: 4.9887

>NTDB_id=753636 OM992_RS01980 WP_049627885.1 411366..412514(+) (rapC) [Bacillus siamensis strain YB-1631]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRTD
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHRRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLENKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=753636 OM992_RS01980 WP_049627885.1 411366..412514(+) (rapC) [Bacillus siamensis strain YB-1631]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTATCGATACATAAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTGGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCAATTACGTATTATAAACAGGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAGCGGGCAGAGTTTTATTTTAAGGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAGAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCTG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCACCGAC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCACTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCGTCGGAATATCACAGGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCATGTTTCCGTTACCTGGAGAATAAAAATTTGTACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.984	100	0.83
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571