Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OM992_RS01785 Genome accession   NZ_CP110268
Coordinates   353514..353951 (-) Length   145 a.a.
NCBI ID   WP_047476187.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 348514..358951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS01750 (OM992_01750) - 349270..349408 (-) 139 Protein_304 hypothetical protein -
  OM992_RS01755 (OM992_01755) - 349556..350758 (+) 1203 WP_264819598.1 GTP-binding protein -
  OM992_RS01760 (OM992_01760) - 350822..351958 (+) 1137 WP_264820250.1 zinc-dependent alcohol dehydrogenase -
  OM992_RS01765 (OM992_01765) - 351975..352409 (+) 435 WP_264819599.1 RDD family protein -
  OM992_RS01770 (OM992_01770) - 352527..352805 (+) 279 WP_406795067.1 YckD family protein -
  OM992_RS01775 (OM992_01775) - 352858..353000 (+) 143 Protein_309 family 1 glycosylhydrolase -
  OM992_RS01780 (OM992_01780) nin/comJ 353094..353492 (-) 399 WP_264819602.1 competence protein ComJ Regulator
  OM992_RS01785 (OM992_01785) nucA/comI 353514..353951 (-) 438 WP_047476187.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OM992_RS01790 (OM992_01790) hxlB 354308..354865 (-) 558 WP_016936797.1 6-phospho-3-hexuloisomerase -
  OM992_RS01795 (OM992_01795) hxlA 354862..355497 (-) 636 WP_016936796.1 3-hexulose-6-phosphate synthase -
  OM992_RS01800 (OM992_01800) - 355730..356092 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16082.39 Da        Isoelectric Point: 8.4850

>NTDB_id=753635 OM992_RS01785 WP_047476187.1 353514..353951(-) (nucA/comI) [Bacillus siamensis strain YB-1631]
MKTLKALLLVLLIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHPSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=753635 OM992_RS01785 WP_047476187.1 353514..353951(-) (nucA/comI) [Bacillus siamensis strain YB-1631]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTCTCATCATTGCCGGAGCAGTTGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAAAGCGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATCCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACGGGGTACGATAGAGATGAATGGCCCATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGGGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634