Detailed information    

insolico Bioinformatically predicted

Overview


Name   micB   Type   Regulator
Locus tag   UKS_RS05805 Genome accession   NZ_AP021887
Coordinates   1131185..1132534 (-) Length   449 a.a.
NCBI ID   WP_156012161.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1126185..1137534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS05790 (UKS_11090) - 1128163..1129881 (+) 1719 WP_156012158.1 phospho-sugar mutase -
  UKS_RS05795 (UKS_11100) - 1129993..1130340 (+) 348 WP_156012159.1 thioredoxin -
  UKS_RS05800 (UKS_11110) vicX 1130374..1131183 (-) 810 WP_156012160.1 MBL fold metallo-hydrolase Regulator
  UKS_RS05805 (UKS_11120) micB 1131185..1132534 (-) 1350 WP_156012161.1 cell wall metabolism sensor histidine kinase VicK Regulator
  UKS_RS05810 (UKS_11130) micA 1132527..1133234 (-) 708 WP_049497334.1 response regulator YycF Regulator
  UKS_RS05815 (UKS_11140) mutY 1133290..1134465 (-) 1176 WP_156012162.1 A/G-specific adenine glycosylase -
  UKS_RS05820 (UKS_11150) pta 1134744..1135718 (-) 975 WP_049497328.1 phosphate acetyltransferase -
  UKS_RS05825 (UKS_11160) - 1135763..1136659 (-) 897 WP_156012163.1 RluA family pseudouridine synthase -
  UKS_RS05830 (UKS_11170) - 1136656..1137474 (-) 819 WP_156012164.1 NAD kinase -

Sequence


Protein


Download         Length: 449 a.a.        Molecular weight: 51570.13 Da        Isoelectric Point: 4.8625

>NTDB_id=75360 UKS_RS05805 WP_156012161.1 1131185..1132534(-) (micB) [Streptococcus sp. 116-D4]
MIEVIRQTILTSDFIFILILIGFILLVTFLLLESRRDNIRLRQLNQKVKDLIAGDYSQVLDMQGSSEITNITNNLNDLSE
VIRLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEEVLNKSILELLKIEDEYELRDLITQVPE
LMIDSQDANGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALS
EPVAPDFIKVSLNETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMRGSDEEKKYELVRDYPITSVW
IEIDTDKMTQVIDNILNNAIKYSPDGGKIKVRMKTTDDQMILSISDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLG
LAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEIEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=75360 UKS_RS05805 WP_156012161.1 1131185..1132534(-) (micB) [Streptococcus sp. 116-D4]
ATGATTGAAGTAATTAGACAAACAATTTTGACGAGTGACTTTATCTTTATCCTCATCCTAATTGGCTTTATTTTGCTAGT
GACTTTTCTTCTACTTGAGAGCCGTCGCGATAATATTCGCCTTAGACAATTAAATCAGAAGGTTAAAGACCTGATTGCAG
GAGATTATTCTCAGGTATTGGATATGCAGGGAAGTTCTGAGATCACTAATATTACCAATAATCTCAATGATTTATCAGAA
GTAATTCGCTTGACTCAAGAAAATCTGGAGCAAGAGAGTAAACGATTGCATAGTATCCTCTCATACATGACAGACGGAGT
CCTTGCGACCAATCGTCGTGGTAAGATTACCATGATTAATGACATGGCAAAGAAGCAGCTAGGCGTTCAGAAAGAAGAGG
TTCTCAATAAAAGTATTCTAGAATTACTTAAGATTGAGGATGAGTATGAACTTCGTGATTTGATTACCCAAGTTCCTGAG
CTTATGATTGATTCTCAGGATGCTAATGGTGAATATCTGAGCCTTCGTGTACGTTTTGCCTTGGTTCGTCGTGAGTCTGG
ATTTATCTCAGGTTTGGTAGCTGTTTTGCATGATACGACGGAGCAGGAGAAGGAAGAGCGCGAACGGAGACTCTTTGTAT
CCAACGTTAGTCATGAATTACGGACTCCTCTAACTAGCGTAAAATCCTATCTTGAAGCCTTGGATGAGGGTGCCTTGTCA
GAACCTGTCGCGCCAGATTTTATCAAGGTGTCTCTAAACGAAACCAACCGTATGATGAGAATGGTGACAGACCTTCTTCA
TCTTTCACGTATTGATAATGCAACCAGTCACCTAGATGTGGAATTAATCAATTTTACTGCCTTTATAACCTTTATCCTCA
ACCGTTTTGATAAGATGAGGGGATCAGATGAAGAGAAGAAATACGAATTGGTTAGAGATTATCCGATTACCTCCGTCTGG
ATTGAAATTGATACAGACAAGATGACACAGGTGATTGATAATATTCTTAATAATGCCATTAAGTATTCACCAGATGGTGG
GAAAATCAAAGTGAGGATGAAGACGACTGATGATCAGATGATTTTGTCTATCTCCGACCAAGGTCTAGGGATTCCAAAGC
AAGATTTGCCGAAGATTTTTGACCGTTTCTACCGAGTCGATCGTGCTAGAAGTCGTGCCCAAGGTGGAACTGGGCTAGGT
CTAGCTATAGCCAAAGAAATTATCAAACAACACAATGGTTTTATTTGGGCCAAGAGTGAATATGGTAAGGGATCTACCTT
TACCATTGTGCTCCCTTATGATAAGGATGCCGTGAAAGAAGAAGTTTGGGAGGACGAAATAGAAGAGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

88.383

97.773

0.864

  vicK Streptococcus mutans UA159

70.56

91.537

0.646


Multiple sequence alignment