Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OMJ04_RS26405 Genome accession   NZ_CP110263
Coordinates   5445423..5445950 (-) Length   175 a.a.
NCBI ID   WP_034316149.1    Uniprot ID   A0A9W4KK92
Organism   Peribacillus frigoritolerans strain HMB20428     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5440423..5450950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMJ04_RS26385 (OMJ04_26385) rplI 5441494..5441943 (-) 450 WP_034316140.1 50S ribosomal protein L9 -
  OMJ04_RS26390 (OMJ04_26390) - 5441940..5443910 (-) 1971 WP_034316142.1 DHH family phosphoesterase -
  OMJ04_RS26395 (OMJ04_26395) - 5443952..5444899 (-) 948 WP_095390656.1 YybS family protein -
  OMJ04_RS26400 (OMJ04_26400) rpsR 5445136..5445375 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  OMJ04_RS26405 (OMJ04_26405) ssbA 5445423..5445950 (-) 528 WP_034316149.1 single-stranded DNA-binding protein Machinery gene
  OMJ04_RS26410 (OMJ04_26410) rpsF 5446020..5446304 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  OMJ04_RS26415 (OMJ04_26415) ychF 5446499..5447599 (-) 1101 WP_034316156.1 redox-regulated ATPase YchF -
  OMJ04_RS26420 (OMJ04_26420) - 5447767..5447964 (-) 198 WP_034316158.1 DUF951 domain-containing protein -
  OMJ04_RS26425 (OMJ04_26425) - 5447985..5448821 (-) 837 WP_034316160.1 mechanosensitive ion channel family protein -
  OMJ04_RS26430 (OMJ04_26430) yyaC 5449192..5449827 (+) 636 WP_053536995.1 spore protease YyaC -
  OMJ04_RS26435 (OMJ04_26435) - 5449877..5450578 (-) 702 WP_264896067.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19418.10 Da        Isoelectric Point: 4.8282

>NTDB_id=753525 OMJ04_RS26405 WP_034316149.1 5445423..5445950(-) (ssbA) [Peribacillus frigoritolerans strain HMB20428]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=753525 OMJ04_RS26405 WP_034316149.1 5445423..5445950(-) (ssbA) [Peribacillus frigoritolerans strain HMB20428]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAAGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTTGCA
AATGACGGTAAGACAATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.383
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.571

0.377