Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OKW95_RS01020 Genome accession   NZ_CP110254
Coordinates   228510..229100 (+) Length   196 a.a.
NCBI ID   WP_005300710.1    Uniprot ID   A0AAJ1UPT4
Organism   Acinetobacter oleivorans strain S4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223510..234100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS00995 (OKW95_00995) - 223580..224386 (-) 807 WP_013196620.1 SDR family NAD(P)-dependent oxidoreductase -
  OKW95_RS01000 (OKW95_01000) - 224490..224861 (-) 372 WP_013196621.1 MerR family transcriptional regulator -
  OKW95_RS01005 (OKW95_01005) tenA 224927..225601 (-) 675 WP_013196622.1 thiaminase II -
  OKW95_RS01010 (OKW95_01010) - 225864..226946 (+) 1083 WP_005300706.1 DUF475 domain-containing protein -
  OKW95_RS01015 (OKW95_01015) - 227094..228458 (+) 1365 WP_005300707.1 MFS transporter -
  OKW95_RS01020 (OKW95_01020) ssb 228510..229100 (+) 591 WP_005300710.1 single-stranded DNA-binding protein Machinery gene
  OKW95_RS01025 (OKW95_01025) - 229142..229465 (-) 324 WP_323739861.1 AzlD domain-containing protein -
  OKW95_RS01030 (OKW95_01030) - 229462..230157 (-) 696 WP_323739862.1 AzlC family ABC transporter permease -
  OKW95_RS01035 (OKW95_01035) - 230226..230774 (+) 549 WP_004789974.1 helix-turn-helix domain-containing protein -
  OKW95_RS01040 (OKW95_01040) - 231101..232543 (+) 1443 WP_013196626.1 amino acid permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21208.98 Da        Isoelectric Point: 6.4832

>NTDB_id=753366 OKW95_RS01020 WP_005300710.1 228510..229100(+) (ssb) [Acinetobacter oleivorans strain S4]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNNGGGYGGQ
GGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=753366 OKW95_RS01020 WP_005300710.1 228510..229100(+) (ssb) [Acinetobacter oleivorans strain S4]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GCTGACTCAATTTTCAATCGCAACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCCTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGCCAAAACAATGGCGGTGGTTATGGTGGCCAA
GGTGGTTTCGGTAATGGTGGCAACAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCACCACAACAACCAGCGTCTGCACC
AGCTGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.971

100

0.536
  ssb Vibrio cholerae strain A1552

44.118

100

0.459
  ssb Neisseria meningitidis MC58

38.191

100

0.388
  ssb Neisseria gonorrhoeae MS11

37.688

100

0.383