Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QHG49_RS28625 Genome accession   NZ_CP123923
Coordinates   6443076..6444155 (+) Length   359 a.a.
NCBI ID   WP_301491743.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6438076..6449155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS28595 (QHG49_28600) - 6438731..6439273 (+) 543 WP_159699711.1 hypothetical protein -
  QHG49_RS28600 (QHG49_28605) pdxS 6439401..6440306 (+) 906 WP_145483957.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QHG49_RS28605 (QHG49_28610) pdxT 6440334..6440939 (+) 606 WP_301491741.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QHG49_RS28610 (QHG49_28615) - 6440988..6441740 (+) 753 WP_145483963.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QHG49_RS28615 (QHG49_28620) ruvC 6441903..6442442 (+) 540 WP_182775203.1 crossover junction endodeoxyribonuclease RuvC -
  QHG49_RS28620 (QHG49_28625) ruvA 6442439..6443047 (+) 609 WP_301491742.1 Holliday junction branch migration protein RuvA -
  QHG49_RS28625 (QHG49_28630) ruvB 6443076..6444155 (+) 1080 WP_301491743.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QHG49_RS28630 (QHG49_28635) yajC 6444348..6444854 (+) 507 WP_145483971.1 preprotein translocase subunit YajC -
  QHG49_RS28635 (QHG49_28640) secD 6445000..6446793 (+) 1794 WP_186337809.1 protein translocase subunit SecD -
  QHG49_RS28640 (QHG49_28645) secF 6446797..6447894 (+) 1098 WP_301491744.1 protein translocase subunit SecF -
  QHG49_RS28645 (QHG49_28650) - 6447891..6448430 (+) 540 WP_159699699.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38261.65 Da        Isoelectric Point: 4.8857

>NTDB_id=753096 QHG49_RS28625 WP_301491743.1 6443076..6444155(+) (ruvB) [Streptomyces sp. WP-1]
MNWDDTADTAGTPAAERLVGSAADREDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKT
TLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPRELERVVHRSAQLLDVGIDTDGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGVINRDIAAAALAVYEVDARGLDRLDRAVLEALLKLFAGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWTHLGLTPPGSATPGNGQPDLFGT

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=753096 QHG49_RS28625 WP_301491743.1 6443076..6444155(+) (ruvB) [Streptomyces sp. WP-1]
ATGAACTGGGACGACACGGCCGACACCGCCGGCACACCCGCCGCCGAGCGGCTGGTGGGCTCCGCCGCCGACCGCGAGGA
CCAGGCCGTCGAGGCCGCCCTGCGCCCCAAGGACCTCGGCGAGTTCATCGGCCAGGAGAAGGTCCGCGAACAGCTCGACC
TGGTGCTGCGGGCGGCCCGCGCGCGCGGCGCCACCGCCGACCACGTCCTGCTCTCCGGCGCTCCCGGCCTCGGCAAGACC
ACCCTGTCGATGATCATCGCCGCCGAGATGGGCGCCCCGATCCGCATCACCTCGGGTCCGGCCATCCAGCACGCCGGCGA
CCTCGCCGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTGCTCTTCCTGGACGAGATCCACCGCATGTCCCGGCCCGCCG
AGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCC
CTCGAACTGCCCCCGTTCACCCTGGTCGGCGCCACCACCCGGGCCGGCCTGCTGCCGCCCCCGCTGCGCGACCGCTTCGG
CTTCACCGCGCACATGGAGTTCTACGAGCCCCGCGAACTGGAGCGCGTCGTGCACCGCTCCGCGCAGCTCCTGGACGTCG
GCATCGATACGGACGGCGCCGCCGAGATCGCGGGCCGCTCCCGCGGCACCCCCCGTATCGCCAACCGCCTGCTGCGCCGC
GTCCGCGACTACGCGCAGGTCAAGGCGGACGGCGTGATCAACCGGGACATCGCCGCGGCCGCCCTCGCCGTCTACGAGGT
CGACGCGCGCGGCCTCGACCGGCTGGACCGCGCCGTCCTGGAGGCTTTGCTGAAGCTTTTCGCCGGGGGCCCCGTCGGCC
TGTCCACCCTGGCCGTCGCGGTGGGGGAGGAGCGGGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTGGTCCGCGAGGGA
CTGCTGGCCCGCACCCCCCGCGGCCGCGTCGCCACGCCCGCCGCCTGGACGCACCTCGGGCTGACCCCGCCCGGCTCCGC
CACACCGGGAAACGGACAACCGGACCTGTTCGGGACGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB AAA lid domain (AAA_lid_4)

(195-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.015

91.643

0.504
  ruvB Synechocystis sp. PCC 6803

52.778

90.251

0.476
  ruvB Streptococcus pneumoniae TIGR4

51.852

90.251

0.468
  ruvB Streptococcus pneumoniae R6

51.852

90.251

0.468
  ruvB Streptococcus pneumoniae D39

51.852

90.251

0.468
  ruvB Helicobacter pylori 26695

49.848

91.643

0.457