Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOZ47_RS07955 Genome accession   NZ_AP021885
Coordinates   1780248..1782032 (-) Length   594 a.a.
NCBI ID   WP_013773276.1    Uniprot ID   F3Y8L0
Organism   Melissococcus plutonius strain DAT1033     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775248..1787032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOZ47_RS07945 (DAT1033_1611) - 1776529..1778190 (+) 1662 WP_013773279.1 polysaccharide lyase family protein -
  GOZ47_RS09530 - 1778191..1778400 (+) 210 WP_013773278.1 hypothetical protein -
  GOZ47_RS07950 (DAT1033_1612) - 1778434..1779747 (+) 1314 Protein_1573 MFS transporter -
  GOZ47_RS07955 (DAT1033_1613) rcrQ 1780248..1782032 (-) 1785 WP_013773276.1 ABC transporter ATP-binding protein Regulator
  GOZ47_RS07960 (DAT1033_1614) rcrP 1782025..1783794 (-) 1770 WP_013773275.1 ABC transporter ATP-binding protein Regulator
  GOZ47_RS07965 (DAT1033_1615) - 1783874..1784311 (-) 438 WP_013773274.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOZ47_RS07970 - 1784965..1785249 (+) 285 WP_013773272.1 hypothetical protein -
  GOZ47_RS07975 (DAT1033_1617) rihA 1785413..1786354 (-) 942 WP_015695426.1 pyrimidine-specific ribonucleoside hydrolase RihA -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65975.26 Da        Isoelectric Point: 6.9603

>NTDB_id=75308 GOZ47_RS07955 WP_013773276.1 1780248..1782032(-) (rcrQ) [Melissococcus plutonius strain DAT1033]
MSKNKSSKKISWTNLKKYASSYTVPFIGAIILSALSSIATISGPDKLSEITDTITAGLRTSIDTDKVVRICIYLACLYGI
GVLLNYSQGFITATIVQKFSQKLRRNISEKINRLPLKYFDSNSQGDTLSRLTNDLDTVGQSLNQGFSMLIPATTLLIGCI
IMMLHSNWMLSVTTVLSVLVSFAIAIAILLLSQKHFAAQQKKLGLISSYVEEIYSGHNTIYAYNARQEAKENFNELNEDL
YSSGWKAQFLSGITQPLMAFIGNFGFVMVCVVGSILALKGTIHFGVVVAFMVYVRLFTNPLSQLAQAFTVLQPAVVSLDR
VFEFLNEEEMADESTKTYQLTNAKGNVSFEHVSFGYLPNQTIIHDFSVSAAAGSKIAIVGPTGAGKTTIVNLLMKFYEIN
KGKILIDGKSINDMTREEVHDQFCMVLQDTWLFEGTVKENLIFNQKDISDEEIIKACKAADVHHFITTLPKGYDTVLDDS
IELSAGQKQLMTIARALIKKAPMLILDEATSSVDTRTEILIQKAMDKLIEGKTSFVIAHRLSTIRNADKILVMQHGDIIE
QGNHEELLQKHGFYAELYNSQFSKQKDVEAIFNQ

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=75308 GOZ47_RS07955 WP_013773276.1 1780248..1782032(-) (rcrQ) [Melissococcus plutonius strain DAT1033]
ATGAGTAAAAATAAATCCTCAAAAAAAATTAGTTGGACAAACTTAAAAAAATATGCTAGTTCGTATACCGTGCCATTTAT
CGGTGCGATTATTCTTTCGGCCTTGAGTAGTATAGCTACAATTTCAGGGCCAGATAAATTAAGTGAGATTACTGATACGA
TTACAGCTGGGTTAAGGACTTCTATTGATACAGATAAGGTTGTTCGAATTTGTATCTATTTAGCTTGTTTATATGGTATT
GGTGTTTTGCTGAATTATTCTCAAGGATTTATTACAGCAACAATTGTTCAAAAATTTTCACAAAAATTGCGACGAAATAT
TTCTGAGAAGATTAATCGTTTGCCTTTAAAATACTTTGATTCAAATAGTCAGGGAGATACATTAAGTCGCCTAACAAATG
ATTTAGATACGGTTGGACAATCTTTAAACCAAGGATTTAGTATGCTAATACCTGCTACGACTCTACTTATTGGTTGTATT
ATTATGATGCTTCATAGTAATTGGATGTTAAGTGTTACAACTGTTTTATCTGTTTTAGTTAGTTTTGCTATTGCTATTGC
CATTTTGTTGCTTTCACAAAAGCATTTTGCTGCCCAACAAAAGAAACTAGGTTTGATCTCTAGTTATGTAGAAGAAATTT
ATTCAGGACATAATACGATTTATGCCTATAATGCGAGACAGGAAGCAAAAGAAAATTTTAATGAGTTGAATGAAGATTTA
TATTCAAGTGGTTGGAAAGCACAATTTCTATCCGGTATTACACAGCCATTAATGGCTTTTATTGGTAATTTTGGTTTTGT
CATGGTTTGTGTAGTAGGTTCAATCTTAGCATTAAAAGGAACCATTCACTTTGGGGTTGTTGTTGCCTTTATGGTTTATG
TTCGGTTGTTTACAAACCCACTTTCTCAATTAGCACAAGCTTTTACGGTATTACAACCAGCTGTTGTTTCTTTGGATAGA
GTATTTGAATTCTTGAATGAAGAAGAAATGGCAGATGAATCAACAAAAACATATCAGCTAACTAATGCGAAAGGAAATGT
TTCTTTTGAACATGTAAGTTTCGGTTATCTTCCTAATCAAACGATTATTCATGATTTTTCAGTTAGTGCTGCTGCAGGCA
GCAAGATTGCGATTGTAGGACCTACTGGAGCTGGTAAAACTACTATTGTAAACTTATTGATGAAATTCTATGAGATAAAT
AAAGGAAAAATTTTAATTGATGGTAAATCGATTAATGACATGACGCGGGAAGAAGTTCATGATCAATTTTGTATGGTGTT
ACAAGATACCTGGTTATTTGAAGGAACGGTAAAAGAAAATTTAATCTTCAATCAAAAAGATATCAGTGATGAAGAAATCA
TTAAAGCCTGTAAAGCAGCAGATGTCCATCATTTTATTACAACTTTACCGAAGGGATATGATACTGTATTAGATGATAGT
ATCGAATTATCAGCTGGGCAAAAGCAATTAATGACTATTGCTAGAGCACTCATTAAAAAAGCGCCAATGTTGATCTTAGA
CGAAGCAACTAGTTCTGTCGATACAAGAACAGAAATACTGATTCAAAAAGCAATGGATAAATTAATAGAAGGAAAAACCT
CCTTTGTCATTGCTCATCGTCTTTCAACCATACGGAATGCAGATAAAATATTGGTTATGCAACATGGAGATATTATTGAA
CAAGGGAACCATGAAGAGTTATTACAAAAGCATGGTTTCTATGCAGAACTTTATAATAGTCAATTTTCAAAACAAAAAGA
TGTAGAAGCTATCTTTAATCAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-301)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F3Y8L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.241

97.811

0.589

Multiple sequence alignment