Detailed information NTG0075300

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: OCX19_RS08635
• Genome accession: NZ_AP024734
• Coordinates: 1760919..1761923 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005768.1
• Uniprot ID: P66757
• Organism: Staphylococcus aureus strain 59691
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1755919..1766923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCX19_RS08620	yajC	1758451..1758711 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
OCX19_RS08625	tgt	1758730..1759869 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
OCX19_RS08630	queA	1759892..1760917 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
OCX19_RS08635	ruvB	1760919..1761923 (-)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
OCX19_RS08640	ruvA	1761955..1762557 (-)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
OCX19_RS08645	-	1762571..1763026 (-)	456	WP_000368902.1	ACT domain-containing protein	-
OCX19_RS08650	obgE	1763039..1764331 (-)	1293	WP_000496100.1	GTPase ObgE	-
OCX19_RS08655	rpmA	1764816..1765100 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
OCX19_RS08660	-	1765112..1765432 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
OCX19_RS08665	rplU	1765438..1765746 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
OCX19_RS08670	mreD	1766234..1766764 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37645.94 Da
• Isoelectric Point: 5.1876

>NTDB_id=75300 OCX19_RS08635 WP_001005768.1 1760919..1761923(-) (ruvB) [Staphylococcus aureus strain 59691]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERG

Nucleotide

• Length: 1005 bp

>NTDB_id=75300 OCX19_RS08635 WP_001005768.1 1760919..1761923(-) (ruvB) [Staphylococcus aureus strain 59691]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
ATTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAGCAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGGATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: P66757

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515