Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OFY13_RS08325 Genome accession   NZ_CP110188
Coordinates   1847080..1847667 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain E1     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842080..1852667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS08305 (OFY13_08305) - 1842308..1843573 (-) 1266 WP_025998897.1 YdgA family protein -
  OFY13_RS08310 (OFY13_08310) - 1843796..1845751 (+) 1956 WP_133320080.1 ATP-binding protein -
  OFY13_RS08315 (OFY13_08315) - 1845748..1846245 (+) 498 WP_001031967.1 response regulator -
  OFY13_RS08320 (OFY13_08320) - 1846436..1846984 (+) 549 WP_001232641.1 hypothetical protein -
  OFY13_RS08325 (OFY13_08325) tfoX 1847080..1847667 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  OFY13_RS08330 (OFY13_08330) - 1848045..1848965 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  OFY13_RS08335 (OFY13_08335) - 1848986..1849891 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  OFY13_RS08340 (OFY13_08340) - 1850080..1850589 (+) 510 WP_000826868.1 hypothetical protein -
  OFY13_RS08345 (OFY13_08345) panP 1850699..1852345 (+) 1647 WP_000253198.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=752946 OFY13_RS08325 WP_001005366.1 1847080..1847667(-) (tfoX) [Vibrio cholerae strain E1]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=752946 OFY13_RS08325 WP_001005366.1 1847080..1847667(-) (tfoX) [Vibrio cholerae strain E1]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGTATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.