Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QFA72_RS04890 Genome accession   NZ_CP123780
Coordinates   1142749..1143834 (-) Length   361 a.a.
NCBI ID   WP_189521160.1    Uniprot ID   -
Organism   Streptomyces sp. SH5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137749..1148834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFA72_RS04870 (QFA72_04870) - 1138519..1139070 (-) 552 WP_189521152.1 adenine phosphoribosyltransferase -
  QFA72_RS04875 (QFA72_04875) secF 1139074..1140156 (-) 1083 WP_280928858.1 protein translocase subunit SecF -
  QFA72_RS04880 (QFA72_04880) secD 1140158..1141948 (-) 1791 WP_189521156.1 protein translocase subunit SecD -
  QFA72_RS04885 (QFA72_04885) yajC 1142099..1142581 (-) 483 WP_280928859.1 preprotein translocase subunit YajC -
  QFA72_RS04890 (QFA72_04890) ruvB 1142749..1143834 (-) 1086 WP_189521160.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QFA72_RS04895 (QFA72_04895) ruvA 1143864..1144490 (-) 627 WP_280928860.1 Holliday junction branch migration protein RuvA -
  QFA72_RS04900 (QFA72_04900) ruvC 1144673..1145236 (-) 564 Protein_977 crossover junction endodeoxyribonuclease RuvC -
  QFA72_RS04905 (QFA72_04905) - 1145389..1146141 (-) 753 WP_006123225.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QFA72_RS04910 (QFA72_04910) pdxT 1146203..1146796 (-) 594 WP_189521166.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QFA72_RS04915 (QFA72_04915) pdxS 1146803..1147723 (-) 921 WP_003970325.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QFA72_RS04920 (QFA72_04920) - 1147867..1148415 (-) 549 WP_189521169.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38656.16 Da        Isoelectric Point: 4.7850

>NTDB_id=752646 QFA72_RS04890 WP_189521160.1 1142749..1143834(-) (ruvB) [Streptomyces sp. SH5]
MNWDETGPETDEPTGPVFDDRLVDADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVVHRSARLLDVVIDVEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGTIDREIAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGAKGQQGLFGA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=752646 QFA72_RS04890 WP_189521160.1 1142749..1143834(-) (ruvB) [Streptomyces sp. SH5]
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCGACCGGCCCGGTCTTCGACGACCGGCTGGTCGACGCGGACGC
CGACGGCGAGGACACCGCGGTCGAGGCGGCGCTGCGCCCGAAGGACCTGGACGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCGATGATCATCGCGGCCGAGATGAACGCCCCGATCCGCATCACCTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCCATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCC
ACCGCGATCCCGCTGGAGCTGCCCCCCTTCACCCTGGTCGGGGCCACCACCCGGGCCGGACTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTCGTCCACCGCTCCGCCCGCC
TGCTGGACGTGGTGATCGACGTGGAGGGCGCCGCCGAGATCGCCGGACGCTCCCGGGGCACCCCCCGTATCGCCAACCGG
CTGCTCCGCCGGGTCCGCGACTACGCCCAGGTCAAGGCGGAGGGGACGATCGACCGGGAGATCGCCGCGGCGGCCCTCAA
GGTGTACGAGGTCGACGCCCGCGGCCTCGACCGGCTGGACCGCGCCGTCCTCGGCGCCCTGCTGAAGCTGTTCGGCGGCG
GCCCCGTCGGCCTGTCCACCCTGGCGGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGACTGCTGGCCAGGACCCCGCGCGGCCGGGTCGCCACCCCCGCTGCCTGGGCCCACCTGGGACTGGTCCC
GCCGCAGCACGGAGCAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

RuvB AAA lid domain (AAA_lid_4)

(199-272)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.853

92.244

0.488
  ruvB Streptococcus pneumoniae TIGR4

53.086

89.751

0.476
  ruvB Streptococcus pneumoniae R6

53.086

89.751

0.476
  ruvB Streptococcus pneumoniae D39

53.086

89.751

0.476
  ruvB Synechocystis sp. PCC 6803

53.185

86.981

0.463
  ruvB Helicobacter pylori 26695

50.314

88.089

0.443