Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GZH91_RS04275 Genome accession   NZ_AP021884
Coordinates   793775..795142 (+) Length   455 a.a.
NCBI ID   WP_223264494.1    Uniprot ID   A0A512L5P8
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 788775..800142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS04240 (SFPGR_08370) cgtA 788904..789983 (-) 1080 WP_147071292.1 Obg family GTPase CgtA -
  GZH91_RS04245 (SFPGR_08380) rpmA 790053..790313 (-) 261 WP_147071290.1 50S ribosomal protein L27 -
  GZH91_RS04250 (SFPGR_08390) rplU 790325..790636 (-) 312 WP_147071288.1 50S ribosomal protein L21 -
  GZH91_RS04255 (SFPGR_08400) ispB 790762..791730 (+) 969 WP_147071286.1 octaprenyl diphosphate synthase -
  GZH91_RS04265 (SFPGR_08410) - 791919..792143 (+) 225 WP_147071285.1 PP0621 family protein -
  GZH91_RS04270 (SFPGR_08420) - 792144..793781 (+) 1638 WP_147071283.1 nitrogen regulation protein NR(II) -
  GZH91_RS04275 (SFPGR_08430) pilR 793775..795142 (+) 1368 WP_223264494.1 sigma-54 dependent transcriptional regulator Regulator
  GZH91_RS04280 (SFPGR_08440) - 795267..796268 (-) 1002 WP_147071281.1 sodium:calcium antiporter -
  GZH91_RS04285 (SFPGR_08450) - 796371..797438 (+) 1068 WP_147071279.1 3-deoxy-D-manno-octulosonic acid transferase -
  GZH91_RS04290 (SFPGR_08460) - 797439..797777 (+) 339 WP_198415395.1 co-chaperone YbbN -
  GZH91_RS04295 (SFPGR_08470) ampD 797777..798319 (+) 543 WP_147071277.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GZH91_RS04300 (SFPGR_08480) hemP 798408..798605 (+) 198 WP_147071276.1 hemin uptake protein HemP -
  GZH91_RS04305 (SFPGR_08490) - 798623..798850 (+) 228 WP_147071274.1 bacterioferritin-associated ferredoxin -
  GZH91_RS04310 (SFPGR_08500) bfr 798861..799325 (+) 465 WP_147071272.1 bacterioferritin -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50125.70 Da        Isoelectric Point: 6.2915

>NTDB_id=75264 GZH91_RS04275 WP_223264494.1 793775..795142(+) (pilR) [Sulfuriferula plumbiphila strain Gro7]
MLKSRENNTGRGGATVLIVDDEADILELLELTLLRMGLDVVRAMRVQEAIAKLKQGDFSLCLTDMRLSDGEGLEVVRYIG
EQRPEIPVAVITAHGNTENAVAALKAGAFDYINKPVTLEQLRALVKSALKLPRRHAVPPASERALIGTSPAMQQARELIE
KLARTQAPVYITGESGSGKELAARLIHEHGARADKVFVPVNCGAIPENLMESEFFGYKKGAFTGAEADRDGFFQAASGGT
LFLDEVADLPLQMQVKLLRVIQEKKVRKVGSTLEESVDVRVISATHQSLARCVEEGRFRQDLYYRLNVIELKMPPLREMR
EDVAEIAGVLLARLAQAAGVAAPRLDKEAGRALSQYDFPGNVRELENILERALALSGGGKIDATDLHLTPAREEGLQEAL
QPGAKWPLQDYLDKLEREAIQEALEKTRYNKTAAAKLLGITFRALRYRLERLGME

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=75264 GZH91_RS04275 WP_223264494.1 793775..795142(+) (pilR) [Sulfuriferula plumbiphila strain Gro7]
GTGTTAAAAAGCAGGGAAAACAACACCGGGCGGGGAGGGGCAACGGTGCTGATCGTGGATGACGAGGCGGATATTCTTGA
GCTGCTGGAGTTGACACTATTACGCATGGGGCTTGACGTGGTGCGCGCCATGCGCGTGCAGGAAGCGATTGCAAAACTCA
AACAGGGTGATTTCAGCCTGTGCCTCACTGACATGCGCCTGTCTGACGGAGAAGGTCTGGAAGTGGTGCGCTACATTGGC
GAACAGCGTCCGGAAATCCCCGTGGCGGTGATCACCGCGCATGGCAATACCGAAAATGCGGTGGCTGCGCTCAAGGCCGG
CGCATTCGACTACATCAACAAACCGGTGACGCTGGAACAGTTGCGTGCCCTGGTCAAATCGGCACTCAAGCTGCCCCGGC
GTCATGCAGTGCCGCCAGCCTCGGAACGTGCGCTGATCGGTACTTCGCCCGCCATGCAGCAGGCGCGTGAACTGATTGAA
AAACTGGCGCGTACCCAGGCGCCGGTATACATCACCGGCGAATCCGGCAGCGGCAAGGAACTCGCCGCACGGCTTATCCA
CGAACACGGCGCACGTGCCGACAAGGTATTCGTGCCGGTCAACTGCGGCGCGATTCCCGAGAATCTGATGGAGTCGGAGT
TTTTCGGCTATAAAAAGGGCGCTTTCACCGGTGCCGAGGCGGATCGCGACGGCTTTTTTCAGGCCGCCAGCGGCGGCACC
CTGTTTCTCGACGAAGTTGCTGATTTGCCGCTGCAAATGCAGGTCAAGCTGCTACGCGTGATTCAGGAAAAAAAGGTGCG
CAAGGTCGGCAGCACGCTGGAAGAGTCCGTGGATGTGCGCGTCATCAGCGCTACCCATCAGAGCCTTGCGCGCTGTGTGG
AAGAAGGACGTTTCCGTCAGGATTTGTACTACCGCCTCAATGTGATCGAACTGAAAATGCCGCCGTTACGCGAAATGCGT
GAAGACGTAGCGGAAATTGCCGGTGTCTTGCTGGCACGCCTGGCACAGGCTGCTGGCGTAGCTGCTCCCAGGCTCGACAA
GGAGGCAGGCAGGGCGCTGTCGCAATACGATTTTCCGGGTAACGTGCGCGAACTGGAGAACATCCTGGAGCGCGCGCTGG
CCTTATCGGGCGGCGGGAAAATTGATGCGACGGACTTGCACCTTACTCCGGCGCGGGAGGAAGGGTTGCAGGAGGCATTG
CAGCCTGGCGCGAAATGGCCGTTGCAGGATTACCTGGACAAACTCGAGCGCGAAGCCATCCAGGAGGCGCTGGAAAAAAC
CCGCTATAACAAGACCGCCGCTGCCAAGCTGCTGGGGATTACTTTTCGTGCGCTGCGATACCGGCTGGAACGGCTGGGGA
TGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(412-451)

Response regulator receiver domain (Response_reg)

(16-125)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512L5P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.77

96.484

0.567
  pilR Acinetobacter baumannii strain A118

46.421

100

0.47
  luxO Vibrio cholerae strain A1552

37.923

97.363

0.369

Multiple sequence alignment