Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GZH91_RS03770 Genome accession   NZ_AP021884
Coordinates   710208..710675 (+) Length   155 a.a.
NCBI ID   WP_147074860.1    Uniprot ID   -
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 705208..715675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS03760 (SFPGR_07440) uvrA 705869..708679 (-) 2811 WP_147074861.1 excinuclease ABC subunit UvrA -
  GZH91_RS03765 (SFPGR_07450) - 708829..710208 (+) 1380 WP_198415389.1 MFS transporter -
  GZH91_RS03770 (SFPGR_07460) ssb 710208..710675 (+) 468 WP_147074860.1 single-stranded DNA-binding protein Machinery gene
  GZH91_RS03775 (SFPGR_07470) - 710675..712246 (+) 1572 WP_147074859.1 AMP-binding protein -
  GZH91_RS03780 (SFPGR_07480) - 712296..712688 (+) 393 WP_147074858.1 hypothetical protein -
  GZH91_RS03785 (SFPGR_07490) - 713163..713417 (+) 255 WP_147074857.1 FmdB family zinc ribbon protein -
  GZH91_RS03790 (SFPGR_07500) - 713455..714072 (+) 618 WP_147074856.1 DUF502 domain-containing protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16908.75 Da        Isoelectric Point: 5.9697

>NTDB_id=75261 GZH91_RS03770 WP_147074860.1 710208..710675(+) (ssb) [Sulfuriferula plumbiphila strain Gro7]
MASVNKVILVGNLGKDPEVRYAPSGDAIANVTLATTENWKDKNGEKQEKTEWHRVSFFGKTAEVVGQYLKKGSQVYVEGR
IQTRKWTDKEGQERYTTEIVADKMQMLGGRSGSASMDSDSGESRRPAAARPAPASNSAAKSGGTSFDDMEDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=75261 GZH91_RS03770 WP_147074860.1 710208..710675(+) (ssb) [Sulfuriferula plumbiphila strain Gro7]
ATGGCATCGGTCAATAAGGTAATTCTGGTAGGCAACCTGGGCAAGGACCCGGAGGTGCGCTATGCGCCCAGCGGCGATGC
CATCGCCAACGTGACCCTGGCTACCACTGAAAACTGGAAAGACAAAAACGGTGAGAAACAGGAAAAAACCGAATGGCATC
GGGTATCGTTCTTCGGAAAAACTGCCGAAGTGGTGGGTCAATACCTGAAAAAAGGTAGTCAGGTGTACGTGGAAGGCCGT
ATCCAGACCCGCAAGTGGACCGACAAAGAAGGCCAGGAACGCTACACCACTGAGATTGTGGCTGACAAAATGCAGATGTT
GGGTGGCCGCAGTGGCTCAGCCAGCATGGATAGCGATAGCGGCGAGAGCCGCCGCCCCGCTGCCGCGCGTCCGGCGCCCG
CATCGAATAGCGCGGCCAAATCTGGCGGCACCAGCTTTGACGATATGGAAGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.568
  ssb Neisseria gonorrhoeae MS11

47.399

100

0.529
  ssb Neisseria meningitidis MC58

46.243

100

0.516

Multiple sequence alignment